BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZG09RM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1748                                                        1273   0.0  

>3x_Contig1748 
          Length = 22566

 Score = 1273 bits (642), Expect = 0.0
 Identities = 689/702 (98%), Gaps = 2/702 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   gcttcttcaaagtattaccacgaggtccctagtaatagccccacaaaatttatatccgga 106
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6983 gcttcttcaaagtattaccacgagg-ccctagtaatagccccacaaaatttatatccgga 7041

                                                                        
Query: 107  taatcctccgtagggatgtaatatttgtcttgaaaccttgtaggtcttctatagtcgtcc 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7042 taatcctccgtagggatgtaatatttgtcttgaaaccttgtaggtcttctatagtcgtcc 7101

                                                                        
Query: 167  ggtgtaacgaagtttggtatcattttcagagcaatctcaactagacgatgtctttcttct 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7102 ggtgtaacgaagtttggtatcattttcagagcaatctcaactagacgatgtctttcttct 7161

                                                                        
Query: 227  tccaattttcttttataccgttgttccttagtgttggttcttctaccacgagcatcgtac 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7162 tccaattttcttttataccgttgttccttagtgttggttcttctaccacgagcatcgtac 7221

                                                                        
Query: 287  acaggcggtggggaaggggaccttgcccttccagaaggaggagtcaaatcattcgatcta 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7222 acaggcggtggggaaggggaccttgcccttccagaaggaggagtcaaatcattcgatcta 7281

                                                                        
Query: 347  agctttgcagtgatttctgcaattctgaacatcacctggtatgctgtctcatgttccggc 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7282 agctttgcagtgatttctgcaattctgaacatcacctggtatgctgtctcatgttccggc 7341

                                                                        
Query: 407  gcgagaaagccattaattactgcaggtaatcctatttgttcaaagacggcattttcacgc 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7342 gcgagaaagccattaattactgcaggtaatcctatttgttcaaagacggcattttcacgc 7401

                                                                        
Query: 467  gcttttgctccccataatgcatcatattgattatcagtacgacctctttccattattatg 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7402 gcttttgctccccataatgcatcatattgattatcagtacgacctctttccattattatg 7461

                                                                        
Query: 527  atacttagatgttactgctagcttaaaggccttcttattatgttattttccgtgcggtga 586
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7462 atacttagatgttactgctagcttaaaggcctccttattatgttattttccgtgcggtga 7521

                                                                        
Query: 587  gttaatgttttagttattcaaattattgtgtttgtaaatgtccaaatataagttactttg 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7522 gttaatgttttagttattcaaattattgtgtttgtaaatgtccaaatataagttactttg 7581

                                                                        
Query: 647  cttcaatggaaatgatgatattggagagttgagaaccacaaatc-aaaaacaccggatac 705
            |||||||||||||||||| |||| |||||||||||||| ||||| |||||||||| | ||
Sbjct: 7582 cttcaatggaaatgatgaaattgtagagttgagaaccaaaaatcaaaaaacaccgtagac 7641

                                                      
Query: 706  cggtctacttataagaggagtttctttgtaagtttaagtaga 747
             |||||||||| | ||||||||||| |||||||| |||||||
Sbjct: 7642 aggtctacttagaggaggagtttctctgtaagttcaagtaga 7683


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8251
Number of Sequences: 1807
Number of extensions: 8251
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)