BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG10FM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1049 0.0
>3x_Contig1719
Length = 15804
Score = 1049 bits (529), Expect = 0.0
Identities = 675/715 (94%), Gaps = 8/715 (1%)
Strand = Plus / Minus
Query: 87 aaaggtgttccctaaaagtccagttattggttaatattgttggagatatgctatgagcaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14913 aaaggtgttccctaaaagtccagttattggttaatattgttggagatatgctatgagcaa 14854
Query: 147 gagcggagtaacgagaatagacgctctttcgctccctcgggccataaaacctttatccgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14853 gagcggagtaacgagaatagacgctctttcgctccctcgggccataaaacctttatccgt 14794
Query: 207 tctttcagcttattctatctcaggtgcattttgtcagaggccggccctttagttcatctc 266
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14793 tctttcagcttagctcatctcaggtgcattttgtcagaggccggccctttagttcatctc 14734
Query: 267 tttccttcttcggtttgcgtacttttcatttcgttcaacgtcgttactgtgtggaggggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14733 tttccttcttcggtttgcgtacttttcatttcgttcaacgtcgttactgtgtggaggggt 14674
Query: 327 aatcggagtttttcaagcaacacaataaaaaaaaaaaagaatatggtaatgaagtagaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14673 aatcggagtttttcaagcaacacaataaaaaaaaaaaagaatatggtaatgaagtagaca 14614
Query: 387 gaagaacgttcgcatagtattggtattactgtacaattcctaaaatcgatactccggaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14613 gaagaacgttcgcatagtattggtattactgtacaattcctaaaatcgatactccggaaa 14554
Query: 447 aaaaaataatcgaaatcgcaagtcagaagacgcagcatcaggttgaagctttttttctaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14553 aaaaaataatcgaaatcgcaagtcagaagacgcagcatcaggttgaagctttttttctaa 14494
Query: 507 gttctactggtcttacaatagggnaacttc-aaaaaagtattcacaaaatgggagttggg 565
|||||||||||||||||||||| |||| | ||||||||||||||||||||| |||||||
Sbjct: 14493 gttctactggtcttacaataggaaaactccaaaaaaagtattcacaaaatggaagttggg 14434
Query: 566 aagtgtaacttcccgcaattcggaggtggggcaggtttcccccttaacctgacccccttc 625
|||||||||| ||||||||||||||||||||||| || |||| | |||||| |||||||
Sbjct: 14433 aagtgtaactccccgcaattcggaggtggggcagctt--ccccctcacctga-ccccttc 14377
Query: 626 aatcgcattttggggatactttttaatactggggaacccttattacgagaaaaggggggt 685
|||||||| | || |||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 14376 aatcgcatctcggtgatactttttaatact-gggaacacttattacgagaaaaggggggt 14318
Query: 686 aagcagaaaaaaagaagccggccacttgacgggcattgccaggccgcctttcttgtgggg 745
||||||| |||| |||| | ||||| |||||| || |||||||||||| | || ||||||
Sbjct: 14317 aagcagagaaaatgaag-cagccacctgacggcca-tgccaggccgccatcctggtgggg 14260
Query: 746 gcgggccgaagaagggaaaagtttttttggagctatttcaaaaccccaagtgggg 800
||||| || || |||| |||| ||||||||||||| ||||| | | |||||||||
Sbjct: 14259 gcggg-cggaggaggggaaagcttttttggagctagttcaagagcgcaagtgggg 14206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,887
Number of Sequences: 1807
Number of extensions: 12887
Number of successful extensions: 197
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)