BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZG10RM1.SCF screened BAC_end
         (908 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig792                                                          906   0.0  

>3x_Contig792 
          Length = 2203

 Score =  906 bits (457), Expect = 0.0
 Identities = 491/501 (98%), Gaps = 1/501 (0%)
 Strand = Plus / Plus

                                                                       
Query: 176 cgtatcttgttttgatcttcaatgcagtttccgttattgcacagacgatctcaaaagtta 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgtatcttgttttgatcttcaatgcagtttccgttattgcacagacgatctcaaaagtta 60

                                                                       
Query: 236 agaacccaagaatatcgattacatcatcgtgaggtttactgtctatcaactgagatattc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agaacccaagaatatcgattacatcatcgtgaggtttactgtctatcaactgagatattc 120

                                                                       
Query: 296 cagaccaatctttgaatctttttgattttctgaaagtgaaactggcttgtcgacaatcag 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagaccaatctttgaatctttttgattttctgaaagtgaaactggcttgtcgacaatcag 180

                                                                       
Query: 356 accaatgcacgtattcttccttcgtcatacctctagtcctatcatcagccatttttagtc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accaatgcacgtattcttccttcgtcatacctctagtcctatcatcagccatttttagtc 240

                                                                       
Query: 416 tcttcaatgtagccatattagcctcccgttcatcatcgtccatatcatcctcatctggat 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcttcaatgtagccatattagcctcccgttcatcatcgtccatatcatcctcatctggat 300

                                                                       
Query: 476 tctcaagaggttgctcattgaacatgaactgtaactcccatggtagcttgatgcttgact 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctcaagaggttgctcattgaacatgaactgtaactcccatggtagcttgatgcttgact 360

                                                                       
Query: 536 tcttcacttttatgttgactcccgcttcgtctttgtcctttttgccagcatcttcatcat 595
           |||||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct: 361 tcttcactttcatgttgactccggctccgtctttgtcctttttgccagcatcatcatcat 420

                                                                       
Query: 596 cattaccgccaggaccagagccatttcctgcaccaccaccttgctgcagcttgctgggca 655
           || ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||
Sbjct: 421 caataccgccaggaccagagccatctcctgcaccaccacc-tgctgcagcttgctgtgca 479

                                
Query: 656 ttttgatctttggcttttttt 676
           | |||||||||||| ||||||
Sbjct: 480 tcttgatctttggcatttttt 500


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9312
Number of Sequences: 1807
Number of extensions: 9312
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)