BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZG11FM1.SCF screened BAC_end
         (940 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1574                                                         769   0.0  

>3x_Contig1574 
          Length = 8021

 Score =  769 bits (388), Expect = 0.0
 Identities = 426/436 (97%), Gaps = 2/436 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   tggtctaagagcccaagtttcatctcaaccaatggctgtccgctgagatggttgtttaag 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3811 tggtctaagagcccaagtttcatctcaaccaatggctgtccgctgagatggttgtttaag 3752

                                                                        
Query: 146  tcgatacaacccttgatatgtccggttaacagtttccccttttccacaatagcgttaatt 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3751 tcgatacaacccttgatatgtccggttaacagtttccccttttccacaatagcgttaatt 3692

                                                                        
Query: 206  tcctcactcatttttatgaatatttcgttattagcatagttgatgccgctcattctccat 265
            ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3691 tcctcactcatatcgatgaatatttcgttattagcatagttgatgccgctcattctccat 3632

                                                                        
Query: 266  gggacaccagattcatcaacggaatgatcaactaacgaggagccaggagacccaacgtgg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3631 gggacaccagattcatcaacggaatgatcaactaacgaggagccaggagacccaacgtgg 3572

                                                                        
Query: 326  aacgaggaaacggatgaagcggatgaagatggatatctactgccactaaaccttgatttt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3571 aacgaggaaacggatgaagcggatgaagatggatatctactgccactaaaccttgatttt 3512

                                                                        
Query: 386  tccggaccattcttaaacattgacccgtccggttgttgtaaggtcttggtaattgtattg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3511 tccggaccattcttaaacattgacccgtccggttgttgtaaggtcttggtaattgtattg 3452

                                                                        
Query: 446  gttgtcgtctttcaacaatttcgataaatcggttttacttgggaccatttgcctttaaag 505
            ||||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||| 
Sbjct: 3451 gttgtcgtc-ttcaacaatttcgataaatcgtttctacttgggacca-ttgcctttaaac 3394

                            
Query: 506  gtttcgagtttgttat 521
            | ||||||| ||||||
Sbjct: 3393 ggttcgagtctgttat 3378


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8890
Number of Sequences: 1807
Number of extensions: 8890
Number of successful extensions: 127
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)