BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG11RM1.SCF screened BAC_end
(1114 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1439 767 0.0
>3x_Contig1439
Length = 7662
Score = 767 bits (387), Expect = 0.0
Identities = 432/443 (97%), Gaps = 3/443 (0%)
Strand = Plus / Plus
Query: 71 cttaagcaaa-tgtttagcttgaccatttgttcattcagaccttctttcaactgcttttt 129
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2827 cttaagcaaagtgtttagcttgaccatttgttcattcagaccttctttcaactgcttttt 2886
Query: 130 agtgcctgtttgaattgaacccaacatgagtccaagacttttcagctcataacttttgat 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2887 agtgcctgtttgaattgaacccaacatgagtccaagacttttcagctcataacttttgat 2946
Query: 190 cccatctagatacttgttcaataccttcaacttactcatactgagtgatcatgttgtacc 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2947 cccatctagatacttgttcaataccttcaacttactcatactgagtgatcatgtggtacc 3006
Query: 250 cccacctctttttccctttacctagaaactatttatgagatggtgccctttttgtttacc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3007 cccacctctttttccctttacctagaaactatttatgagatggtgccctttttgtttacc 3066
Query: 310 ttttgaaggttgaagaactgattatcatgatctaagagatgagtacatctaacgtaaaat 369
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3067 ttttgaaggttgaagaactgattatcaggatctaagagatgagtacatctaacgtaaaag 3126
Query: 370 aagacatattacaacaatacactgtcccctggggtagaaatgaatacctatgaaattcgt 429
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3127 aagacatattagaagaatacactgtcccctggggtagaaatgaatagctatgaaattcgt 3186
Query: 430 cccatgacgtgacgatgaaatctatggccctcaattgatgctgcaaaaccgtaatttagg 489
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3187 cgcatgacgtgacgatgaaatctatggccctcaattgatgctgcaaaaccgtaatatagg 3246
Query: 490 gtttctacaatttccggtgacgg 512
| |||||||| ||||||||||||
Sbjct: 3247 g-ttctacaa-ttccggtgacgg 3267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,932
Number of Sequences: 1807
Number of extensions: 12932
Number of successful extensions: 122
Number of sequences better than 1.0e-20: 1
length of query: 1114
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1098
effective length of database: 10,329,639
effective search space: 11341943622
effective search space used: 11341943622
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)