BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG12FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1506 1203 0.0
>3x_Contig1506
Length = 7652
Score = 1203 bits (607), Expect = 0.0
Identities = 664/678 (97%), Gaps = 4/678 (0%)
Strand = Plus / Plus
Query: 97 aaacgtgaaataaagaagttgcagaaacatagagaacagatcaagaattggttgagcaaa 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacgtgaaataaagaagttgcagaaacatagagaacagatcaagaattggttgagcaaa 60
Query: 157 gatgatatcaaggatagagcagatgtgttgatggagaaccgtagactcattgagagcggt 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgatatcaaggatagagcagatgtgttgatggagaaccgtagactcattgagagcggt 120
Query: 217 tttgttaggttcaagtcgatagagaagattatgaagacgaaaaagttctcgactgaagcg 276
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atggaaaggttcaagtcgatagagaagattatgaagacgaaaaagttctcgactgaagcg 180
Query: 277 ttgacaaatccagatttgattaaagatcctcgagagctcaaaaagagagaccaatttttg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgacaaatccagatttgattaaagatcctcgagagctcaaaaagagagaccaatttttg 240
Query: 337 ttcgtcgaggagtgtctcgaagagcttcagaaacagctagatactttcgaggtggaaaac 396
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcgtcgaggagtgtctcgaaga-cttcagaaacagctagatactttcgaggtggaaaac 299
Query: 397 aatgaagaacaaatagagaaacatactttccatatctcaaatttggagaatattctaaaa 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aatgaagaacaaatagagaaacatactttccatatctcaaatttggagaatattctaaaa 359
Query: 457 ctgttacaaaatgacgatttggaccctgaaacggttcaagaatttcaagaagacatcaga 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctgttacaaaatgacgatttggaccctgaaacggttcaagaatttcaagaagacatcaga 419
Query: 517 tattacgttgacaacaatgatgatccggactttgtagattacgacaccatataccangat 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 420 tattacgttgacaacaatgatgatccggactttgtagattacgacaccatataccaggat 479
Query: 577 atgggctgcgaaatccagcctgaagatcttttgaaagaacagagcacaccaagtaaacca 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atgggctgcgaaatccagcctgaagatcttttgaaagaacagagcacaccaagtaaacca 539
Query: 637 aagagaagcgaacgttcgccaaggaaaaaggcttctcctgctccattaagccttaaatca 696
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 540 aagagaagcgaacgttcgccaaggaaaaaggcttctcctgctccattaagcctcaaatca 599
Query: 697 aagacttcctctcttgat-ttaccgccacatcgattgctagtgcagct-taccattacat 754
||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 600 aagacttcctctcctgatattaccgccacatcgattgctagtgcagctcaaccatcacat 659
Query: 755 gaaaaatgggcaagaacc 772
| | ||||||||||||||
Sbjct: 660 g-agaatgggcaagaacc 676
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7109
Number of Sequences: 1807
Number of extensions: 7109
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)