BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG12RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1498 1263 0.0
>3x_Contig1498
Length = 12634
Score = 1263 bits (637), Expect = 0.0
Identities = 721/741 (97%), Gaps = 6/741 (0%)
Strand = Plus / Minus
Query: 24 gcttgaagggcatgatgccatcaaagagttaatgacgtatctaagaaaatggttagatca 83
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8249 gcttgaagggctagatgccatcaaagagttaatgacgtatctaagaaaatggttagatca 8190
Query: 84 tgaagtatacaagcatcagacttcaacttatcaaaaacagttggaactggaaaagcagta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8189 tgaagtatacaagcatcagacttcaacttatcaaaaacagttggaactggaaaagcagta 8130
Query: 144 tagaaaggcacccaaagaggttgtgaaataggacactggcacaacacaagctcaaataaa 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8129 tagaaaggcacccaaagaggttgtgaaataggacactggcacaacacaagctcaaataaa 8070
Query: 204 gagctgttaaatatatttctctgcgtcctcgtcttaccattgtcatctctccacttgtaa 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8069 gagctgttaaatatatttctctgcgtcctcgtcttaccattgtcatctctccacttgtaa 8010
Query: 264 atagaatatcggagagaatgaaaactaggcctgacgtatataccttagcatcaacatcat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8009 atagaatatcggagagaatgaaaactaggcctgacgtatataccttagcatcaacatcat 7950
Query: 324 caacaacaaaatttaattcagcatttcaatatatgtaaagatatatgtatatttattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7949 caacaacaaaatttaattcagcatttcaatatatgtaaagatatatgtatatttattcga 7890
Query: 384 gaataatatcccaattataagaactcttacttagccgtacgctatatcttcgtctcttgt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7889 gaataatatcccaattataagaactcttacttagccgtacgctatatcttcgtctcttgt 7830
Query: 444 gcattacattgttgccattatttcgttcagtttcttaaaaagaaaagcccttaagaccaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7829 gcattacattgttgccattatttcgttcagtttcttaaaaagaaaagcccttaagaccaa 7770
Query: 504 aaacaggaaaaaacctttaaaaagctgcgattgcgaaacaatacatcgcgagatgattag 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7769 aaacaggaaaaaacctttaaaaagctgcgattgcgaaacaatacatcgcgagatgattag 7710
Query: 564 ggatacattattcaattggatggcaggcgaacccgctttatattaagaaacgataacctc 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7709 ggatacattattcaattggatggcaggcgaacccgctttatattaagaaacgataa-ctt 7651
Query: 624 cgatctttacctcattatcaagatgaacggacatttacattacggtattaccgaaaaaat 683
||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 7650 cgatcttcacctcattatcaagatgaacggacatttaca-tacggttataccgaaaaaat 7592
Query: 684 cccatgccggatcatttacgaaatgggggcaagagtgcctgattccacagaaatgcacga 743
|| ||| ||||||||||||||| | |||| ||||||| ||||||||||| ||||||||
Sbjct: 7591 ccaatg-cggatcatttacgaatcgtgggc-agagtgcttgattccacag-tatgcacga 7535
Query: 744 ttttcccacgattatatgttt 764
| | ||||||||||||||||
Sbjct: 7534 -tatgccacgattatatgttt 7515
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7478
Number of Sequences: 1807
Number of extensions: 7478
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)