BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZH01FM1.SCF screened BAC_end
         (869 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1360                                                        1269   0.0  

>3x_Contig1360 
          Length = 8285

 Score = 1269 bits (640), Expect = 0.0
 Identities = 705/723 (97%), Gaps = 3/723 (0%)
 Strand = Plus / Minus

                                                                        
Query: 89   ttccttgactgaaaagattaaggttaagatagtttaaacattacaagatgacttcagaaa 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3968 ttccttgactgaaaagattaaggttaagatagtttaaacattacaagatgacttcagaaa 3909

                                                                        
Query: 149  taaaagaaaaagaacaatttgaaatcggcgtcgttggtgacactgagactggatccatcg 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 taaaagaaaaagaacaatttgaaatcggcgtcgttggtgacactgagactggatccatcg 3849

                                                                        
Query: 209  aggtttatgatggataaatcaaaaacgttaaatcacaacaattggaaggtactga-gcat 267
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3848 aggtttatgatggagaaatcaaaaacgttaaatcacaacaattggaaggtactgaagcat 3789

                                                                        
Query: 268  gctgttggccttgatctcttccaagaagttttggacagtgacttgaaatacgatgacaaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3788 gctgttggccttgatctcttccaagaagttttggacagtgacttgaaatacgatgacaaa 3729

                                                                        
Query: 328  gagtactccaaaatcagacgtaagattgatacctggttattaccagtgctttgtatcaca 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 gagtactccaaaatcagacgtaagattgatacctggttattaccagtgctttgtatcaca 3669

                                                                        
Query: 388  tacatgcttcagttcttggataagttatcgttgaattatgcttctgcatattccatgaag 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3668 tacatgcttcagttcttggataagttatcgttgaattatgcttctgcatattccatgaag 3609

                                                                        
Query: 448  gaggatcttggtcttgttgggaatgagtacggtaatattgccgctatcttcaatgtcggg 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3608 gaggatcttggtcttgttgggaatgagtacggtaatattgccgctatcttcaatgtcggg 3549

                                                                        
Query: 508  tatttgatcggttccattccagcaaactacgttattcaaaaacttccagtggccaaatac 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3548 tatttgatcggttccattccagcaaactacgttattcaaaaacttccagtggccaaatac 3489

                                                                        
Query: 568  acaggtgtcgccttattcgtttgggcaattttgttgattggacatattggagctacgaac 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3488 acaggtgtcgccttattcgtttgggcaattttgttgattggacatattggagctacgaac 3429

                                                                        
Query: 628  tactcatcaatgatggcattgagattcttattangattgatggaagcattaatctctcca 687
            ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 3428 tactcatcaatgatggcattgagattcttattaggattgatggaagcatcaatctctcca 3369

                                                                        
Query: 688  tccaatatgatgatgtgtgccatgttttacaccagaaga-aaccacccttcaggatgtgt 746
            ||||||||||||||||||||||||||||||| ||  ||| ||| ||| ||||| ||||||
Sbjct: 3368 tccaatatgatgatgtgtgccatgttttacaacaagagagaacaaccattcagaatgtgt 3309

                                                                        
Query: 747  acatttttgtctatgaatggggtaacgacaatgggtggtggccctttgggcctacgggtt 806
            |||||||||||||||||||| ||| ||||||||| |||| || || | ||||||||||||
Sbjct: 3308 acatttttgtctatgaatggtgtagcgacaatggttggt-gcgctattggcctacgggtt 3250

               
Query: 807  ggg 809
            |||
Sbjct: 3249 ggg 3247


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6693
Number of Sequences: 1807
Number of extensions: 6693
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 869
length of database: 10,358,551
effective HSP length: 16
effective length of query: 853
effective length of database: 10,329,639
effective search space: 8811182067
effective search space used: 8811182067
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)