BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH01RM1.SCF screened BAC_end
(852 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1511 1501 0.0
>3x_Contig1511
Length = 8569
Score = 1501 bits (757), Expect = 0.0
Identities = 795/804 (98%), Gaps = 3/804 (0%)
Strand = Plus / Minus
Query: 48 tcctgtgtttcaggcaaacatagaaccacagaaaccgcagagagtggatttaggcccacg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6288 tcctgtgtttcaggcaaacatagaaccacagaaaccgcagagagtggatttaggcccacg 6229
Query: 108 atgcagtctatagggagtctgtcctaatcccaaattcaaagatcttagatccgttatttg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6228 atgcagtctatagggagtctgtcctaatcccaaattcaaagatcttagatccgttatttg 6169
Query: 168 tattggatcgccattccccttacataagtttccttccagtaatgcatggaaatgtctgga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6168 tattggatcgccattccccttacataagtttccttccagtaatgcatggaaatgtctgga 6109
Query: 228 gtaccaagacgctagacgtgtccgtgtccgtgtccgtgtccggttcaaagaaaaagtgtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6108 gtaccaagacgctagacgtgtccgtgtccgtgtccgtgtccggttcaaagaaaaagtgtt 6049
Query: 288 tcatggcaaatatgaaagaaaagattcacagccaagacaccaaaagacaacaccatgttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048 tcatggcaaatatgaaagaaaagattcacagccaagacaccaaaagacaacaccatgttt 5989
Query: 348 cataccttgttagccatgtatggtacgatatgggaagacctatgttagtagaaagcaggt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5988 cataccttgttagccatgtatggtacgatatgggaagacctatgttagtagaaagcaggt 5929
Query: 408 accgtcaatcaacctgcttaacccataatcgtcatcctctaccagagatgcaaaaaaaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5928 accgtcaatcaacctgcttaacccataatcgtcatcctctaccagagatgcaaaaaaaaa 5869
Query: 468 aatctactgcctgagggaatacactcacggggatggctgacacgtaggtaccgagttgct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5868 aatctactgcctgagggaatacactcacggggatggctgacacgtaggtaccgagttgct 5809
Query: 528 accagttacatcaagacagcacagattcggataggagaggatacttcagtgatatgaaat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5808 accagttacatcaagacagcacagattcggataggagaggatacttcagtgatatgaaat 5749
Query: 588 aaggtaaacaaattaaaataaacaaaattaaaataaaagtgtgcaccgcatgatagtcta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5748 aaggtaaacaaattaaaataaacaaaattaaaataaaagtgtgcaccgcatgatagtcta 5689
Query: 648 ataaggaaacctgtgtgctacaaattgcgcaatttcttcttcgctattttaacttttagg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5688 ataaggaaacctgtgtgctacaaattgcgcaatttcttcttcgctattttaacttttagg 5629
Query: 708 tttttctgttttgcattnttcaactttttttggttttctgtttttggttactgtgtgtat 767
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5628 tttttctgttttgcatttttcaactttttttggttttctgtttttgtttactgtgtgtat 5569
Query: 768 ggttcgtataagtttgctgtacctcttttgttaaaagacgttacactagcccaatcaaat 827
|||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 5568 ggttcgtatagttttgctgtacctcttctgttaaaagacgttacactagccc-atcaaat 5510
Query: 828 tgttccacttcgggttatttgaat 851
|| |||||| |||| |||||||||
Sbjct: 5509 tg-tccactacggg-tatttgaat 5488
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,502
Number of Sequences: 1807
Number of extensions: 11502
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 852
length of database: 10,358,551
effective HSP length: 16
effective length of query: 836
effective length of database: 10,329,639
effective search space: 8635578204
effective search space used: 8635578204
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)