BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZH02FM1.SCF screened BAC_end
         (960 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1173                                                         846   0.0  

>3x_Contig1173 
          Length = 7454

 Score =  846 bits (427), Expect = 0.0
 Identities = 452/459 (98%), Gaps = 1/459 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   gaatgccagtaaaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatg 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3937 gaatgccagtaaaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatg 3878

                                                                        
Query: 148  tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3877 tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 3818

                                                                        
Query: 208  tccagggacaatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3817 tccagggacaatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 3758

                                                                        
Query: 268  ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3757 ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 3698

                                                                        
Query: 328  acgaagggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatgg 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3697 acgaagggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatgg 3638

                                                                        
Query: 388  tctatctctttacctcacagaacccagattgtttatacaccagattccttctatatcatg 447
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3637 tctatctctttacctcacagaacccagattgtttatacaccagattcctcctatatcatg 3578

                                                                        
Query: 448  cagcggatggagtgcaatcctagatctatggtcattgaagcatgtacggggtcaggttcc 507
            |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct: 3577 cagcggatggagtgcaatcctagatctagggtcattgaagcaggtacggggtcaggtt-c 3519

                                                   
Query: 508  cttttctaatgcgtttgccaaatctgcaagtcatttatt 546
            ||||||| |||||||||||| ||||||| ||||||||||
Sbjct: 3518 cttttctcatgcgtttgccagatctgcaggtcatttatt 3480


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6321
Number of Sequences: 1807
Number of extensions: 6321
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)