BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZH02RM1.SCF screened BAC_end
         (963 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig441                                                         1179   0.0  

>3x_Contig441 
          Length = 2196

 Score = 1179 bits (595), Expect = 0.0
 Identities = 689/711 (96%), Gaps = 7/711 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   tagtttcaaaccattgaaatatgccttaacgccta-tgttcattaccaatattctaacaa 106
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1445 tagtttcaaaccattgaaatatgccttaacgcctagtgttcattaccaatattctaacaa 1386

                                                                        
Query: 107  acatcaataaagagaaacccgtagagctcgaaatgagtaaatacttcatccccgatattg 166
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1385 acatcaataaagagaaacccgtagagctcaaaatgagtaaatacttcatccccgatattg 1326

                                                                        
Query: 167  attctaaggttttagaaagaaccaagctaccgacaaaag-tgtttgccagacatggattt 225
            ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1325 attataaggttttagaaagaaccaagctaccgacaaaagctgtttgccagacatggattt 1266

                                                                        
Query: 226  actcatgtgaatatttctgatgatattccggggggatacaaattgatttcaagtattcta 285
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1265 actcatgtgaatatttctgatgatattcgggggggatacaaattgatttcaagtattcta 1206

                                                                        
Query: 286  aaatgccatagcatggaagaagtaaatgctattgggaagaaatttcaattggaggatcta 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 aaatgccatagcatggaagaagtaaatgctattgggaagaaatttcaattggaggatcta 1146

                                                                        
Query: 346  gttgaaaacaagagcaaaaagaaaagccctaactatgttctcatagctagtaaagcgtca 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 gttgaaaacaagagcaaaaagaaaagccctaactatgttctcatagctagtaaagcgtca 1086

                                                                        
Query: 406  atggctaaaaaattcaataagtgcgttaaagatgctgacaagaataagaaagtttttgtt 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 atggctaaaaaattcaataagtgcgttaaagatgctgacaagaataagaaagtttttgtt 1026

                                                                        
Query: 466  gttgaatggaattggtgcgtgaaaagcattttcgacttggatataaatctagaagatcat 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 gttgaatggaattggtgcgtgaaaagcattttcgacttggatataaatctagaagatcat 966

                                                                        
Query: 526  gaatatgtcatttataataagtaatgtaaccccagaatggctacgatggtataagaatat 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  gaatatgtcatttataataagtaatgtaaccccagaatggctacgatggtataagaatat 906

                                                                        
Query: 586  gtagtatatgcaacgatttatcgaatagttgaattctactcaataggtgagggtattgca 645
            |||||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct: 905  gtagtatatgtaacgatttatcgaatagttg-attctactcaataggtgaggtta-tgca 848

                                                                        
Query: 646  aagatattactatttccttgttactggtgatttggatcaaccaagggaaaaataatcatt 705
            |||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||| |
Sbjct: 847  aagatattactatttccttgttactgttga-ttggagcaaccaagggaaaaagaatcaat 789

                                                               
Query: 706  gcttaaaattatacgtttcaaactattccattcccttaatagctttgtttg 756
            |||  |||| | ||| ||||||| | |||||| ||||||||||||||||||
Sbjct: 788  gctagaaatcaaacg-ttcaaaccagtccatt-ccttaatagctttgtttg 740


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8431
Number of Sequences: 1807
Number of extensions: 8431
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)