BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC6ZH02RM1.SCF screened BAC_end (963 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig441 1179 0.0 >3x_Contig441 Length = 2196 Score = 1179 bits (595), Expect = 0.0 Identities = 689/711 (96%), Gaps = 7/711 (0%) Strand = Plus / Minus Query: 48 tagtttcaaaccattgaaatatgccttaacgccta-tgttcattaccaatattctaacaa 106 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1445 tagtttcaaaccattgaaatatgccttaacgcctagtgttcattaccaatattctaacaa 1386 Query: 107 acatcaataaagagaaacccgtagagctcgaaatgagtaaatacttcatccccgatattg 166 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1385 acatcaataaagagaaacccgtagagctcaaaatgagtaaatacttcatccccgatattg 1326 Query: 167 attctaaggttttagaaagaaccaagctaccgacaaaag-tgtttgccagacatggattt 225 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1325 attataaggttttagaaagaaccaagctaccgacaaaagctgtttgccagacatggattt 1266 Query: 226 actcatgtgaatatttctgatgatattccggggggatacaaattgatttcaagtattcta 285 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1265 actcatgtgaatatttctgatgatattcgggggggatacaaattgatttcaagtattcta 1206 Query: 286 aaatgccatagcatggaagaagtaaatgctattgggaagaaatttcaattggaggatcta 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1205 aaatgccatagcatggaagaagtaaatgctattgggaagaaatttcaattggaggatcta 1146 Query: 346 gttgaaaacaagagcaaaaagaaaagccctaactatgttctcatagctagtaaagcgtca 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1145 gttgaaaacaagagcaaaaagaaaagccctaactatgttctcatagctagtaaagcgtca 1086 Query: 406 atggctaaaaaattcaataagtgcgttaaagatgctgacaagaataagaaagtttttgtt 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1085 atggctaaaaaattcaataagtgcgttaaagatgctgacaagaataagaaagtttttgtt 1026 Query: 466 gttgaatggaattggtgcgtgaaaagcattttcgacttggatataaatctagaagatcat 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1025 gttgaatggaattggtgcgtgaaaagcattttcgacttggatataaatctagaagatcat 966 Query: 526 gaatatgtcatttataataagtaatgtaaccccagaatggctacgatggtataagaatat 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 965 gaatatgtcatttataataagtaatgtaaccccagaatggctacgatggtataagaatat 906 Query: 586 gtagtatatgcaacgatttatcgaatagttgaattctactcaataggtgagggtattgca 645 |||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||| Sbjct: 905 gtagtatatgtaacgatttatcgaatagttg-attctactcaataggtgaggtta-tgca 848 Query: 646 aagatattactatttccttgttactggtgatttggatcaaccaagggaaaaataatcatt 705 |||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||| | Sbjct: 847 aagatattactatttccttgttactgttga-ttggagcaaccaagggaaaaagaatcaat 789 Query: 706 gcttaaaattatacgtttcaaactattccattcccttaatagctttgtttg 756 ||| |||| | ||| ||||||| | |||||| |||||||||||||||||| Sbjct: 788 gctagaaatcaaacg-ttcaaaccagtccatt-ccttaatagctttgtttg 740 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8431 Number of Sequences: 1807 Number of extensions: 8431 Number of successful extensions: 65 Number of sequences better than 1.0e-20: 1 length of query: 963 length of database: 10,358,551 effective HSP length: 16 effective length of query: 947 effective length of database: 10,329,639 effective search space: 9782168133 effective search space used: 9782168133 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)