BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH03FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 872 0.0
>3x_Contig1765
Length = 24733
Score = 872 bits (440), Expect = 0.0
Identities = 496/512 (96%), Gaps = 2/512 (0%)
Strand = Plus / Minus
Query: 111 tactaacatttaatgatgatccaaatgcaacagttaacaagaaatgtcaaccaagattga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16398 tactaacatttaatgatgatccaaatgcaacagttaacaagaaatgtcaaccaagattga 16339
Query: 171 taaaattttatacacctgtagaggttgaaaagcaaacgcttttattacagcaagtatatg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16338 taaaattttatacacctgtagaggttgaaaagcaaacgcttttattacagcaagtatatg 16279
Query: 231 aacttatatctcatcgtaacagtcaggtgcagtcatctttcttagtaactcctccatctt 290
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16278 aacttatatctcagcgtaacagtcaggtgcagtcatctttcttagtaactcctccatctt 16219
Query: 291 tattaatggactcaggtgataacgaagatattcaaatcatatacaagaactacgccacgt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16218 tattaatggactcaggtgataacgaagatattcaaatcatatacaagaactacgccacgt 16159
Query: 351 tatacttcacatttatagttgatgaacaagaatcagaactagcaatcttagatttgattc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16158 tatacttcacatttatagttgatgaacaagaatcagaactagcaatcttagatttgattc 16099
Query: 411 aaacgtttgtagaggcattggataaatgtttcgaagaagtgaatgagctagacttaatct 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16098 aaacgtttgtagaggcattggataaatgtttcgaagaagtgaatgagctagacttaatct 16039
Query: 471 tcaattggcaaacattggaaagtgtactttgaagagattattcaaggtggattggtgata 530
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 16038 tcaattggcaaacattggaaagtgtac-ttgaagagattatccaaggtggattggtgata 15980
Query: 531 gagaccaatgtaaggaaaatcttatgtgctgaatattaattgaataacgcttattaaaat 590
||||||||||||||||||||| || |||||| | || |||||||||||||| || ||| |
Sbjct: 15979 gagaccaatgtaaggaaaatcgtaagtgctgtagatgaattgaataacgctaatgaaagt 15920
Query: 591 gaaaattttttttatcaaactaccagggaatc 622
||||| || ||| | ||||||| |||||||||
Sbjct: 15919 gaaaa-ttctttcaccaaactagcagggaatc 15889
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9092
Number of Sequences: 1807
Number of extensions: 9092
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)