BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH03RM1.SCF screened BAC_end
(1022 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1011 0.0
>3x_Contig1794
Length = 36744
Score = 1011 bits (510), Expect = 0.0
Identities = 545/554 (98%), Gaps = 2/554 (0%)
Strand = Plus / Minus
Query: 73 caagctttaccaacacatttgttactgttttcgtaaattgttttgattaacagatcacta 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22647 caagctttaccaacacatttgttactgttttcgtaaattgttttgattaacagatcacta 22588
Query: 133 ccagtactttgtgatgaggagggaatatagtcctgatgggaaattgctgtctcaattgga 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22587 ccagtactttgtgatgaggagggaatatagtcctgatgggaaattgctgtctcaattgga 22528
Query: 193 ttctttggatcatatacaacatatgcttgaatttgagagtaatcttcgaacaagaactgg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22527 ttctttggatcatatacaacatatgcttgaatttgagagtaatcttcgaacaagaactgg 22468
Query: 253 aaatctctgacaaccaacttatttgtattccttctttcaactatgtgatcctgagattcc 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22467 aaatctctgacaaccaacttatttgtattccttctttcaactatgtgatcctgagattcc 22408
Query: 313 cagatgtattttactttgcttggtttaacagtatcagcctgaactgtcttagttaaccac 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22407 cagatgtattttactttgcttggtttaacagtatcagcctgaactgtcttagttaaccac 22348
Query: 373 caagtactttgctttgagaactctaattctggaatagtacctggttcaaatttcgccgta 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22347 caagtactttgctttgagaactctaattctggaatagtacctggttcaaatttcgccgta 22288
Query: 433 gttgtccgtcttaatggctggaaactggccggaatttgtggagcagcagatgaaggagtg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22287 gttgtccgtcttaatggctggaaactggccggaatttgtggagcagcagatgaaggagtg 22228
Query: 493 gctggtgatgagtttgctgcacctggaatagtctgaattgaaggtctttgttgcggtgca 552
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 22227 gctggtgatgagtttgctgcacctggaatagtctgaattgaaggtcttcgttgcggtgca 22168
Query: 553 ttagaaggaggcaatggtggtagggccgtcactgcttgttactggaggatcaagggccac 612
|||||||||||||||||||| ||||||| ||||||||| |||||||||| | |||| ||
Sbjct: 22167 ttagaaggaggcaatggtgg-agggccgccactgcttggtactggaggagc-aggggcag 22110
Query: 613 catcgggctgtttt 626
|| |||||||||||
Sbjct: 22109 cagcgggctgtttt 22096
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6743
Number of Sequences: 1807
Number of extensions: 6743
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 1022
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1006
effective length of database: 10,329,639
effective search space: 10391616834
effective search space used: 10391616834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)