BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH04FM1.SCF screened BAC_end
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 1229 0.0
>3x_Contig1278
Length = 6932
Score = 1229 bits (620), Expect = 0.0
Identities = 651/660 (98%), Gaps = 1/660 (0%)
Strand = Plus / Plus
Query: 88 attaccaatgtgcgatgagattcaaatgctagacaaattcacacagctatgagacaactt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4795 attaccaatgtgcgatgagattcaaatgctagacaaattcacacagctatgagacaactt 4854
Query: 148 aagttcgccaccgtatgacatgatctcgaagaccgaaaactagaaaattaattcactatg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4855 aagttcgccaccgtatgacatgatctcgaagaccgaaaactagaaaattaattcactatg 4914
Query: 208 gggaagtttggactaccttaaactttattcattaaaatcttaggaaatcgttcaggacta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4915 gggaagtttggactaccttaaactttattcattaaaatcttaggaaatcgttcaggacta 4974
Query: 268 atcttctaaagtagtatggtattgttttaattatagctttttcagtatatctgaaatagt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4975 atcttctaaagtagtatggtattgttttaattatagctttttcagtatatctgaaatagt 5034
Query: 328 aaatattaatgaagatgcatatatagacgaattgaaaaaaggtactaacgacgtggggat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5035 aaatattaatgaagatgcatatatagacgaattgaaaaaaggtactaacgacgtggggat 5094
Query: 388 atgaaagcattaggaatgaacgttaataatcgtggtattgtaaagtgatgaaggaactga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5095 atgaaagcattaggaatgaacgttaataatcgtggtattgtaaagtgatgaaggaactga 5154
Query: 448 aacaatgaagtttgcattatttttcggtttgaagagaaatcttcaagctgcaaatgtgaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5155 aacaatgaagtttgcattatttttcggtttgaagagaaatcttcaagctgcaaatgtgaa 5214
Query: 508 agtaaatactcaaaagatggattcttttatagtatctgttaacctattacaacaatagag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5215 agtaaatactcaaaagatggattcttttatagtatctgttaacctattacaacaatagag 5274
Query: 568 cagcgatggcggcgataccagcaccggcaccgaaggtgaccttgccagcgttgtttgccg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 5275 cagcgatggcggcgataccagcaccggcaccgaaggtgaccttgccagcgttgttgccgg 5334
Query: 628 attcagtcttgatccagacggattgagtaccagtggtagcttgaattttgccatcaccga 687
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5335 attcagtcttgatccagacggattgagtaccagtggtagcttgaatttggccatcaccga 5394
Query: 688 tttgagagactggggcaacagtttgaacgacgttagaaaacttttgatggggtttctgga 747
||||||||||||||||||||||||| |||||||||| || | ||||||| ||||||||||
Sbjct: 5395 tttgagagactggggcaacagtttggacgacgttag-aatcctttgatgtggtttctgga 5453
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6417
Number of Sequences: 1807
Number of extensions: 6417
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)