BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZH04RM1.SCF screened BAC_end
         (860 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1610                                                        1441   0.0  

>3x_Contig1610 
          Length = 13981

 Score = 1441 bits (727), Expect = 0.0
 Identities = 753/759 (99%), Gaps = 2/759 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   ggtcagacaatgaatataatgctagagcatctgtattttctgctttgactactttagtag 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5209 ggtcagacaatgaatataatgctagagcatctgtattttctgctttgactactttagtag 5268

                                                                        
Query: 105  agttcgctaatgaccaagtcggggaaactactacctcaatttccacttttgttttggata 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5269 agttcgctaatgaccaagtcggggaaactactacctcaatttccacttttgttttggata 5328

                                                                        
Query: 165  aacttggacaaacaatgcaagtggatgaagctcaattaacagctgaagatagacaaaact 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5329 aacttggacaaacaatgcaagtggatgaagctcaattaacagctgaagatagacaaaact 5388

                                                                        
Query: 225  tacatgaattacaatcgaacattttatctgttttggctgcagtgattagaaagaacccac 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5389 tacatgaattacaatcgaacattttatctgttttggctgcagtgattagaaagaacccac 5448

                                                                        
Query: 285  aatctgttaatccagtagcagatatgttgatggatctatttatgaaacttttgagcaaga 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5449 aatctgttaatccagtagcagatatgttgatggatctatttatgaaacttttgagcaaga 5508

                                                                        
Query: 345  atgatacaacatacgtggaagatgatgtcttttacgctatttctgctctagcatctgcgt 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5509 atgatacaacatacgtggaagatgatgtcttttacgctatttctgctctagcatctgcgt 5568

                                                                        
Query: 405  tgggtaaaaactttgaaaagtatttggaaagtttctccccatatttggttaatgcgttaa 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5569 tgggtaaaaactttgaaaagtatttggaaagtttctccccatatttggttaatgcgttaa 5628

                                                                        
Query: 465  atcaagtacagtcccaagtttctatcactgccgtcaatctaattgctgatatctctaact 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5629 atcaagtacagtcccaagtttctatcactgccgtcaatctaattgctgatatctctaact 5688

                                                                        
Query: 525  ctttagaggatgacttcaagaaattcgctccatcgttcatgagtgttcttgggcaaatgc 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5689 ctttagaggatgacttcaagaaattcgctccatcgttcatgagtgttcttgggcaaatgc 5748

                                                                        
Query: 585  tttcttctccagatgcgaagaacgaattacaacctgcagtcctttctgtttttggtgata 644
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5749 tttcttctccagatgcgaagaaggaattacaacctgcagtcctttctgtttttggtgata 5808

                                                                        
Query: 645  ttgccaccaacattggatcagattttatacagtatttgtcccaagttatgtccgtgtgcg 704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 ttgccaccaacattggatcagattttatacagtatttgtcccaagttatgtccgtgtgcg 5868

                                                                        
Query: 705  tcatggctcaaaactataaaccgaattatagctcttttgatgccctcgattatcaatata 764
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5869 tcatggctcaaaactataaaccgaattatagctcttctgatgccctcgattatcaatata 5928

                                                   
Query: 765  aatttattcgaatcaatatttggacgcatacgttggaat 803
            || |||| |||||||||| |||||||||||||| |||||
Sbjct: 5929 aa-ttatacgaatcaata-ttggacgcatacgtaggaat 5965


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6656
Number of Sequences: 1807
Number of extensions: 6656
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 860
length of database: 10,358,551
effective HSP length: 16
effective length of query: 844
effective length of database: 10,329,639
effective search space: 8718215316
effective search space used: 8718215316
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)