BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZH05FM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1141                                                        1067   0.0  

>3x_Contig1141 
          Length = 5795

 Score = 1067 bits (538), Expect = 0.0
 Identities = 662/690 (95%), Gaps = 10/690 (1%)
 Strand = Plus / Minus

                                                                        
Query: 90   gatcaattacggtgtaacggtgttcttgaaggaataagaattgctagggatggttatccc 149
            ||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct: 5795 gatcaattacggtgtaacggtgt-cttga-ggaataagaattgctagggatg-ttatccc 5739

                                                                        
Query: 150  aacagaatattcttcaaggaatttttccaaagatacaaaattctttcagatgagtgtaga 209
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5738 aacagaatattcttcaaggaatttt-ccaaagatacaaaattctttcagatgagtgtaga 5680

                                                                        
Query: 210  ttcactatacatctccaaaaagaactgtgaaatactgttatcatcacttcacctggatcc 269
            ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5679 ttcacta-acaactccaaaaagaactgtgaaatactgttatcatcacttcacctggatcc 5621

                                                                        
Query: 270  aacaatttacaaggtcgggaacacaaagctgtttttcaaagctggtgtattagcaaacct 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 aacaatttacaaggtcgggaacacaaagctgtttttcaaagctggtgtattagcaaacct 5561

                                                                        
Query: 330  tgaactgctgaaagaacagcgtttgagtgcagctgttactaggttaaatgctataatatc 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 tgaactgctgaaagaacagcgtttgagtgcagctgttactaggttaaatgctataatatc 5501

                                                                        
Query: 390  tgctaattcagtcaggaaagaaatcagaagtcatcttaagaaattacaggctgcaaggat 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5500 tgctaattcagtcaggaaagaaatcagaagtcatcttaagaaattacaggctgcaaggat 5441

                                                                        
Query: 450  cttaaaggtaacttttgaaacctatgacaggctcatggaaaatccatggtacaatttata 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 cttaaaggtaacttttgaaacctatgacaggctcatggaaaatccatggtacaatttata 5381

                                                                        
Query: 510  catgaaattgctaccgcttttagactcttcgaataccatcttgaaaactaataaaatagc 569
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5380 catgaaattgctaccgcttttagactcttcgaataccatcttgaaaactaaaaaaatagc 5321

                                                                        
Query: 570  tgaacaagtcaaacaactcgaaaacaagctagcagagagcgaaaaaagtacgacggttat 629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5320 tgaacaagtcaaacaactcgaaaacaagctagcagagagcgaaaaaagtacgacggttat 5261

                                                                        
Query: 630  tgtatatgcaaagaggctgggggaacaagagtt-ttaaaagttaaagccttcattgttaa 688
             ||| ||||||||||||||| ||||||||||||   |||||||||||| || ||||||||
Sbjct: 5260 ggtagatgcaaagaggctggtggaacaagagttagaaaaagttaaagcatt-attgttaa 5202

                                                                        
Query: 689  aataaactagtgatctacaacagtcccaaggatcttcttggaggctaccaatgacaaacc 748
            || |||||||||| ||||||||||| ||| || |||||| ||||||||||| |||||| |
Sbjct: 5201 aagaaactagtgaactacaacagtcgcaa-gaacttctt-gaggctaccaa-gacaaagc 5145

                                          
Query: 749  aaatctaaattcatcaaaatggggatgaaa 778
            ||||  ||||||| |||||  |||||||||
Sbjct: 5144 aaattcaaattcaacaaaaatgggatgaaa 5115


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7722
Number of Sequences: 1807
Number of extensions: 7722
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)