BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC6ZH05FM1.SCF screened BAC_end (930 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1141 1067 0.0 >3x_Contig1141 Length = 5795 Score = 1067 bits (538), Expect = 0.0 Identities = 662/690 (95%), Gaps = 10/690 (1%) Strand = Plus / Minus Query: 90 gatcaattacggtgtaacggtgttcttgaaggaataagaattgctagggatggttatccc 149 ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| Sbjct: 5795 gatcaattacggtgtaacggtgt-cttga-ggaataagaattgctagggatg-ttatccc 5739 Query: 150 aacagaatattcttcaaggaatttttccaaagatacaaaattctttcagatgagtgtaga 209 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 5738 aacagaatattcttcaaggaatttt-ccaaagatacaaaattctttcagatgagtgtaga 5680 Query: 210 ttcactatacatctccaaaaagaactgtgaaatactgttatcatcacttcacctggatcc 269 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5679 ttcacta-acaactccaaaaagaactgtgaaatactgttatcatcacttcacctggatcc 5621 Query: 270 aacaatttacaaggtcgggaacacaaagctgtttttcaaagctggtgtattagcaaacct 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5620 aacaatttacaaggtcgggaacacaaagctgtttttcaaagctggtgtattagcaaacct 5561 Query: 330 tgaactgctgaaagaacagcgtttgagtgcagctgttactaggttaaatgctataatatc 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5560 tgaactgctgaaagaacagcgtttgagtgcagctgttactaggttaaatgctataatatc 5501 Query: 390 tgctaattcagtcaggaaagaaatcagaagtcatcttaagaaattacaggctgcaaggat 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5500 tgctaattcagtcaggaaagaaatcagaagtcatcttaagaaattacaggctgcaaggat 5441 Query: 450 cttaaaggtaacttttgaaacctatgacaggctcatggaaaatccatggtacaatttata 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5440 cttaaaggtaacttttgaaacctatgacaggctcatggaaaatccatggtacaatttata 5381 Query: 510 catgaaattgctaccgcttttagactcttcgaataccatcttgaaaactaataaaatagc 569 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 5380 catgaaattgctaccgcttttagactcttcgaataccatcttgaaaactaaaaaaatagc 5321 Query: 570 tgaacaagtcaaacaactcgaaaacaagctagcagagagcgaaaaaagtacgacggttat 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5320 tgaacaagtcaaacaactcgaaaacaagctagcagagagcgaaaaaagtacgacggttat 5261 Query: 630 tgtatatgcaaagaggctgggggaacaagagtt-ttaaaagttaaagccttcattgttaa 688 ||| ||||||||||||||| |||||||||||| |||||||||||| || |||||||| Sbjct: 5260 ggtagatgcaaagaggctggtggaacaagagttagaaaaagttaaagcatt-attgttaa 5202 Query: 689 aataaactagtgatctacaacagtcccaaggatcttcttggaggctaccaatgacaaacc 748 || |||||||||| ||||||||||| ||| || |||||| ||||||||||| |||||| | Sbjct: 5201 aagaaactagtgaactacaacagtcgcaa-gaacttctt-gaggctaccaa-gacaaagc 5145 Query: 749 aaatctaaattcatcaaaatggggatgaaa 778 |||| ||||||| ||||| ||||||||| Sbjct: 5144 aaattcaaattcaacaaaaatgggatgaaa 5115 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7722 Number of Sequences: 1807 Number of extensions: 7722 Number of successful extensions: 57 Number of sequences better than 1.0e-20: 1 length of query: 930 length of database: 10,358,551 effective HSP length: 16 effective length of query: 914 effective length of database: 10,329,639 effective search space: 9441290046 effective search space used: 9441290046 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)