BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH05RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1792 1265 0.0
>3x_Contig1792
Length = 28468
Score = 1265 bits (638), Expect = 0.0
Identities = 681/690 (98%), Gaps = 4/690 (0%)
Strand = Plus / Plus
Query: 45 gcttactgaccactgactgcttttaagttcatacatagtaccatttgtccacttcttgtg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13286 gcttactgaccactgactgcttttaagttcatacatagtaccatttgtccacttcttgtg 13345
Query: 105 ggattggtgtgtcattttgttgattaggttcaactcttatgtgagttcccgctctgacaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13346 ggattggtgtgtcattttgttgattaggttcaactcttatgtgagttcccgctctgacaa 13405
Query: 165 tggagggaatctcggcctctgatccatctgctttaatttctcccctaactagagcattcc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13406 tggagggaatctcggcctctgatccatctgctttaatttctcccctaactagagcattcc 13465
Query: 225 aggcttcgtgacattcttgtaccgtagaaagtgtagatgcttggtcctggtactcacctt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13466 aggcttcgtgacattcttgtaccgtagaaagtgtagatgcttggtcctggtactcacctt 13525
Query: 285 cgaatgcaaacacattaggttgtttcccagcaggaatcttgtaatctctgaaccatgttc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13526 cgaatgcaaacacattaggttgtttcccagcaggaatcttgtaatctctgaaccatgttc 13585
Query: 345 tagttgcatccaagagaccaggcataacagtgtctacatctgccaacttgttcaatttta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13586 tagttgcatccaagagaccaggcataacagtgtctacatctgccaacttgttcaatttta 13645
Query: 405 tagcaatgggatcttcaatgtcgatacaaatgactttccaatcgagttctccatcgtcaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13646 tagcaatgggatcttcaatgtcgatacaaatgactttccaatcgagttctccatcgtcaa 13705
Query: 465 tgagggctaatgaccctagaagctttacttttttgatatctcccattttggcgatgctgg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13706 tgagggctaatgaccctagaagctttacttttttgatatctcccattttggcgatgctgg 13765
Query: 525 aaccaatttcacaacagtccaatgggtcattatcacccttgaaaccgggcaatacttcaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13766 aaccaatttcacaacagtccaatgggtcattatcacccttgaaaccgggcaatacttcaa 13825
Query: 585 taagtggctgttcccatgtctgtgggataaccccatagttatgaatgtatccatgggaag 644
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 13826 taagtggctgttcccatgtctgtgggatagccccatagttatgaatgtatccatggtaag 13885
Query: 645 ggaaaatgttattgacaaatccgtggcttgcctttcttttaggccctgtgctgatggggt 704
|||||||||||||||||||| ||||||||||||||| |||| | |||||| |||||||||
Sbjct: 13886 ggaaaatgttattgacaaat-cgtggcttgcctttc-tttatgtcctgtg-tgatggggt 13942
Query: 705 taaatggttcgggcttactggatttcaaac 734
|||||||||||| |||||| ||||||||||
Sbjct: 13943 taaatggttcggtcttact-gatttcaaac 13971
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6044
Number of Sequences: 1807
Number of extensions: 6044
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)