BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH06RM1.SCF screened BAC_end
(1044 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 878 0.0
>3x_Contig1629
Length = 12481
Score = 878 bits (443), Expect = 0.0
Identities = 464/471 (98%)
Strand = Plus / Minus
Query: 128 aaaactacagacaccatataatcagattcccaagctgaaaagagtcttcaacccccaaaa 187
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3556 aaaactacagacaccatagaatcagattcccaagctgaaaagagtcttcaacccccaaaa 3497
Query: 188 catttgttggaaaccccagttaaagtggctgatgttgacgaaaacggtgtggctagattc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3496 catttgttggaaaccccagttaaagtggctgatgttgacgaaaacggtgtggctagattc 3437
Query: 248 gacaagaaaagagttatgggtttcttgatattgatgaaatcgaaaaataagacattggat 307
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 3436 gacaagaaaagagttatgggtttcttgagacagatgaaatcgaaaaataagacattggat 3377
Query: 308 gacaaaccactccctgaacaaacaaaaaggtttactatcccttcgtcaccagcgggtcct 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3376 gacaaaccactccctgaacaaacaaaaaggtttactatcccttcgtcaccagcgggtcct 3317
Query: 368 ccaaattcaacgggtacaattgctgaaccattgacgccgaaatgctctcaattgatgcaa 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3316 ccaaattcaacgggtacaattgctgaaccattgacgccgaaatgctctcaattgatgcaa 3257
Query: 428 tttagaactggtttcactccgaattttaacattgacgagttacttgtgagtccgaaactt 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3256 tttagaactggtttcactccgaattttaacattgacgagttacttgtgagtccgaaactt 3197
Query: 488 caagaatcattgaataaaaacctttttaaatctcctaaccaatacgtatttaaagtactg 547
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3196 caagaatcattgaataaaaaccttttcaaatctcctaaccaatacgtatttaaagtactg 3137
Query: 548 tctggagatcccctgttgatcaacgatcatcatgagacagattttatgaat 598
|||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 3136 tctggagatcccctgttgatcaacgatcatcaggagacagatattatgaat 3086
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8445
Number of Sequences: 1807
Number of extensions: 8445
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 1044
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1028
effective length of database: 10,329,639
effective search space: 10618868892
effective search space used: 10618868892
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)