BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH07RM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1193 0.0
>3x_Contig1728
Length = 20685
Score = 1193 bits (602), Expect = 0.0
Identities = 671/682 (98%), Gaps = 9/682 (1%)
Strand = Plus / Minus
Query: 48 gcaacgtacgcttctaaccttctgttagatctttgtaaatgcttcactgcattattgatc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7528 gcaacgtacgcttctaaccttctgttagatctttgtaaatgcttcactgcattattgatc 7469
Query: 108 tcttttctgatctcttgtaattcatgctcagacgattctctaatagcaatcacgaactct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7468 tcttttctgatctcttgtaattcatgctcagacgattctctaatagcaatcacgaactct 7409
Query: 168 tgaatctgaattggtctacgaataccagaagaatgtgccatatttctatgttaagtctat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7408 tgaatctgaattggtctacgaataccagaagaatgtgccatatttctatgttaagtctat 7349
Query: 228 ccttagctatgtatgttttttcactttttagtcttgtttcggttggaaagtacgagatga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7348 ccttagctatgtatgttttttcactttttagtcttgtttcggttggaaagtacgagatga 7289
Query: 288 attaagatcggtatccttaactatatattcaagctagccttttataacaataatttaagc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7288 attaagatcggtatccttaactatatattcaagctagccttttataacaataatttaagc 7229
Query: 348 cagagtttattctcttactatttatacccaacggtaagatatcacgccccacatatgaca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7228 cagagtttattctcttactatttatacccaacggtaagatatcacgccccacatatgaca 7169
Query: 408 cccacccctccgaggcaccatcattgcaaatcagagtgtatgatgcgcacgttactatgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7168 cccacccctccgaggcaccatcattgcaaatcagagtgtatgatgcgcacgttactatgc 7109
Query: 468 tgactttttccagctccaaagcaacactacttgttaaaaatcacatcagcttttctgctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7108 tgactttttccagctccaaagcaacactacttgttaaaaatcacatcagcttttctgctt 7049
Query: 528 tcctttctcctgggctggatttccccgcctaagtccttctcttggaactgaactttgtcc 587
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7048 tcctttctcctgggctggatttccccgcctaagtccttctctgggaactgaactttgtcc 6989
Query: 588 ctttcagcaaagagttgagaaactcacgaggaacacaaaaacaaccgag-attaggggcc 646
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct: 6988 ctttcagcaaagagttgagaaactcacgaggaacacaaaaacaa-cgagaattagggg-c 6931
Query: 647 cgcttatgtaatttcttttcatcccaataaaacaggaaaaattgtggctggttttggctt 706
||||||||||| ||||||||||||| |||||||| |||||||||| ||| ||||||||||
Sbjct: 6930 cgcttatgtaa-ttcttttcatccc-ataaaaca-gaaaaattgt-gct-gttttggctt 6876
Query: 707 tcacccatacacttacgcacaa 728
||||||||||| |||||||||
Sbjct: 6875 ccacccatacac-tacgcacaa 6855
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6872
Number of Sequences: 1807
Number of extensions: 6872
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)