BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZH08FM1.SCF screened BAC_end
         (921 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1603                                                         890   0.0  

>3x_Contig1603 
          Length = 12146

 Score =  890 bits (449), Expect = 0.0
 Identities = 555/584 (95%), Gaps = 6/584 (1%)
 Strand = Plus / Plus

                                                                       
Query: 89  gcagtggcatcatttcttggttcaatggaaattcctatgattaactgcgaaatattgtga 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gcagtggcatcatttcttggttcaatggaaattcctatgattaactgcgaaatattgtga 258

                                                                       
Query: 149 tttgcgttggcaccattgaggtcatctgtcattacatcgtcttccatatcaatttcacct 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttgcgttggcaccattgaggtcatctgtcattacatcgtcttccatatcaatttcacct 318

                                                                       
Query: 209 aatccatctgaagggttagctgtcacaccattcccaacattggcctgtggaagttttacc 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatccatctgaagggttagctgtcacaccattcccaacattggcctgtggaagttttacc 378

                                                                       
Query: 269 ttaaaaattgcactcggtttctcattacccaagtatccaaataatttgaagtcctccgct 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttaaaaattgcactcggtttctcattacccaagtatccaaataatttgaagtcctccgct 438

                                                                       
Query: 329 ggatttagtttaaaatacactgtcgcaaggaattcctgagggaatgttacgtttggtagt 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggatttagtttaaaatacactgtcgcaaggaattcctgagggaatgttacgtttggtagt 498

                                                                       
Query: 389 ataaacaaagtgatatgtgagtatgattttggctttgttgatgataatactattgtatgc 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ataaacaaagtgatatgtgagtatgattttggctttgttgatgataatactattgtatgc 558

                                                                       
Query: 449 tgcaaaccattagaattaggttctttagtggataattgtaaggggttcccggaggcgatg 508
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 559 tgcaaaccattagaattaggtacttcagtggataattgtaaggggttcccggaggcgatg 618

                                                                       
Query: 509 gcagcaaacattttacaatttctgtttgctgtacttttgtcagagcgtgagttatttgga 568
           |||||||||||||||||||| ||||||||||||| |||||||||| ||||||   | |||
Sbjct: 619 gcagcaaacattttacaattcctgtttgctgtac-tttgtcagagtgtgagtagatagga 677

                                                                       
Query: 569 gttccattttttttgtaaccaaaaacccttcttacaaaggtggggtggggttttccccac 628
           || ||||||| || |  | || ||| || || ||||||||| | || | |||||||| ||
Sbjct: 678 gtaccattttcttgg--aacagaaagccgtcctacaaaggttgtgt-gtgttttcccaac 734

                                                       
Query: 629 ttcttttattgagtgtatctctttatataacttgaactttatat 672
           |||||||| ||  |||||| |||||||| |||||||||||||||
Sbjct: 735 ttctttta-tgtatgtatc-ctttatattacttgaactttatat 776


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9541
Number of Sequences: 1807
Number of extensions: 9541
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)