BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZH09RM1.SCF screened BAC_end
         (1032 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig731                                                          973   0.0  

>3x_Contig731 
          Length = 3248

 Score =  973 bits (491), Expect = 0.0
 Identities = 517/523 (98%), Gaps = 2/523 (0%)
 Strand = Plus / Minus

                                                                        
Query: 76   cttaatttccaatttaagtgttatgaacctctctcctggtccagtcttaaaccctctaat 135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1496 cttaatttccaatttaagtgttatgaacctctctcctggtccagtcttaaaccctctaat 1437

                                                                        
Query: 136  gtatcctacatcgctaaagccatttcagcttagaaagtgtaaaagacaataccttgatgg 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 gtatcctacatcgctaaagccatttcagcttagaaagtgtaaaagacaataccttgatgg 1377

                                                                        
Query: 196  aaataacgacaagttgtacagaaagtagcgcacagcgtcttgttttaacggcagaatata 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 aaataacgacaagttgtacagaaagtagcgcacagcgtcttgttttaacggcagaatata 1317

                                                                        
Query: 256  tatatacagtttaatctcataacaaccgcagttgtccccaaataccttattgttcccatc 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 tatatacagtttaatctcataacaaccgcagttgtccccaaataccttattgttcccatc 1257

                                                                        
Query: 316  tctagtgatgaaaacttttcttcatcattactgatgggcaacatacatgaaaaaaaattg 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 tctagtgatgaaaacttttcttcatcattactgatgggcaacatacatgaaaaaaaattg 1197

                                                                        
Query: 376  taaaatctctaattcatcaacttacctttaccagcgaataattcaacgacaggcaactct 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 taaaatctctaattcatcaacttacctttaccagcgaataattcaacgacaggcaactct 1137

                                                                        
Query: 436  atctcattctatttcctaatccaaaatcgtgtattaactgaacttggtattcatatctta 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 atctcattctatttcctaatccaaaatcgtgtattaactgaacttggtattcatatctta 1077

                                                                        
Query: 496  ataatataatatgttttaatttttctattcttctttgaagtttgtaaatcaattcataac 555
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1076 ataatataatatgttttaatttttctatttttctttgaagtttgtaaatcaattcataac 1017

                                                       
Query: 556  ttttttttattgcaacaaaagagtacaattcataagaaaaacc 598
             ||  |||||||||||||| |||||||| ||||||||||||||
Sbjct: 1016 -ttagtttattgcaacaaaggagtacaa-tcataagaaaaacc 976


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,725
Number of Sequences: 1807
Number of extensions: 12725
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 1032
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1016
effective length of database: 10,329,639
effective search space: 10494913224
effective search space used: 10494913224
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)