BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH10RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig644 1191 0.0
>3x_Contig644
Length = 3211
Score = 1191 bits (601), Expect = 0.0
Identities = 629/637 (98%), Gaps = 1/637 (0%)
Strand = Plus / Plus
Query: 49 ttagggttaatgacttggagtggaaatgcatgttaccatgtgattcttcgtcgtttctca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2571 ttagggttaatgacttggagtggaaatgcatgttaccatgtgattcttcgtcgtttctca 2630
Query: 109 aattagttcttgaaagtctttgacttagtcttttcttcaacctagttggcgatgattgca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2631 aattagttcttgaaagtctttgacttagtcttttcttcaacctagttggcgatgattgca 2690
Query: 169 cagaacttaattgccttgagttattgttacttaagtaaagggatatttg-ggaatcgtct 227
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2691 cagaacttaattgccttgagttattgttacttaagtaaagggatatttgcggaatcgtct 2750
Query: 228 cttccgtcttgcgtagaaaacgcaccagaattgaacttaataggggttctgatggcagtg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2751 cttccgtcttgcgtagaaaacgcaccagaattgaacttaataggggttctgatggcagtg 2810
Query: 288 acaattgatgaaatggactttgttggggaatgttctatgtgggaatacaacgccggaact 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2811 acaattgatgaaatggactttgttggggaatgttctatgtgggaatacaacgccggaact 2870
Query: 348 attggagatgtgttctgtttcaagccttcttccatcaacccagtttcatgagggtgaatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2871 attggagatgtgttctgtttcaagccttcttccatcaacccagtttcatgagggtgaatt 2930
Query: 408 gctctgtcgacaaaactcatcacctcatcgtcaccgtcgtacatttcatggccttggggg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2931 gctctgtcgacaaaactcatcacctcatcgtcaccgtcgtacatttcatggccttggggg 2990
Query: 468 aaggtagtctttttcagtgggaagctgaagctggtgtcaatatcgaaggcggggtataat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2991 aaggtagtctttttcagtgggaagctgaagctggtgtcaatatcgaaggcggggtataat 3050
Query: 528 tgatcagctggttgtgtgtgatccttttctctgttcaacagcatgtctttattcttgttt 587
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3051 tcaccagctggttgtgtgtgatccttttctctgttcaacagcatgtctttattcttgttc 3110
Query: 588 cagtaatcaatcgtaattgtgctgttaccgatatccgtattcaatgctggctgagacact 647
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3111 cagtaatcaatcgtaattgtgctgttaccgatatccgtattcaaggctggctgagacact 3170
Query: 648 gaattttgagttgaatatacggcgtgcttcggttgaa 684
|| |||||||| |||||||||||||||| ||||||||
Sbjct: 3171 gagttttgagtagaatatacggcgtgctccggttgaa 3207
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6114
Number of Sequences: 1807
Number of extensions: 6114
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)