BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH11FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1154 944 0.0
>3x_Contig1154
Length = 6277
Score = 944 bits (476), Expect = 0.0
Identities = 553/576 (96%), Gaps = 2/576 (0%)
Strand = Plus / Minus
Query: 96 aaagagctgcacgataagaaatttaaagagaaaggtgtaacaccattgattagattatat 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aaagagctgcacgataagaaatttaaagagaaaggtgtaacaccattgattagattatat 770
Query: 156 gagaaatataatgcctgtgctctgaatgatggggatttacagaattgggctgaattgata 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gagaaatataatgcctgtgctctgaatgatggggatttacagaattgggctgaattgata 710
Query: 216 gatagagacatacgaatattggaaggtaccataaaaatcctggaagatgaatcaaatgaa 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gatagagacatacgaatattggaaggtaccataaaaatcctggaagatgaatcaaatgaa 650
Query: 276 gggtagcttatgcaaattatgaataaaagaagtaaaaatgattatacatattgacatgct 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gggtagcttatgcaaattatgaataaaagaagtaaaaatgattatacatattgacatgct 590
Query: 336 ggatgcatataaaagttcgattattagctagaagaagaaaaaagtagcataacacatttc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggatgcatataaaagttcgattattagctagaagaagaaaaaagtagcataacacatttc 530
Query: 396 atcctttttatcagttttgaaagctgtaggcatgtttgttattgctaataatggtaagtt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atcctttttatcagttttgaaagctgtaggcatgtttgttattgctaataatggtaagtt 470
Query: 456 agcgtcgctaatgtgcatacgctgttaattctttttatgcagcgccttgggcagcacggt 515
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 469 agcgtcgctaatgtgcatacgctgttaattcttttcatgcagcgccttgggcagcacggt 410
Query: 516 cctattttgatgtttccacccaaccaacgtctattactttaatgacattttgaaggtttt 575
|| ||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |||
Sbjct: 409 cccattttgatgtttccacccaaccagcgtctataactttaatgacatcttgaagg-ttt 351
Query: 576 aggttttcccttaaattgccgtcttccataacaaaccgtttattgattgggccatatttt 635
||||||| ||||| || ||||||||||||| || ||||||| ||| || ||||| |||
Sbjct: 350 aggtttttccttagatgtgcgtcttccataaccaaacgtttatagataggcccata-ttt 292
Query: 636 ttttgggcttaattttgaaaacattgcttttgactt 671
|||||||| | | ||||||||||||| |||||||
Sbjct: 291 ctttgggctgatatctgaaaacattgctcttgactt 256
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,585
Number of Sequences: 1807
Number of extensions: 16585
Number of successful extensions: 259
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)