BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH11RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1043 0.0
>3x_Contig1777
Length = 26319
Score = 1043 bits (526), Expect = 0.0
Identities = 575/586 (98%), Gaps = 4/586 (0%)
Strand = Plus / Plus
Query: 45 ctttttgctgttcagaattttgttttagtgt-aacaatttccgtagaatctcacgaggag 103
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1480 ctttttgctgttcagaattttgttttagtgttaacaatttccgtagaatctcacgaggag 1539
Query: 104 tcataatttcaccgccaatcaattcaccaaatttggtacctggtttgatactctccaaaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 tcataatttcaccgccaatcaattcaccaaatttggtacctggtttgatactctccaaaa 1599
Query: 164 atatctcttctgattctgggtattttcttcttatcactctgatatcgtttattatttcaa 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 1600 atatctcttctgattctgggtattttcttcttatcactctgatatcgtttatcaggtcaa 1659
Query: 224 taagggataactgcttttgaagtagcacttcagcgtaatcttcacaaagtttgaaatact 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1660 taagggataactgcttttgaagtagcacttcagcgtaatcttcacaaagtttgaaatact 1719
Query: 284 tgggaaactcaacgacctctctcaaattttgtgcatttttaaatagcacaaataaacctt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1720 tgggaaactcaacgacctctctcaaattttgtgcatttttaaatagcacaaataaacctt 1779
Query: 344 tccaagcaatcacatttgtatcgtccaaggcaatggctttaaggtagttgtcttttgcct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1780 tccaagcaatcacatttgtatcgtccaaggcaatggctttaaggtagttgtcttttgcct 1839
Query: 404 ttacgttctgaccaatgctttcatttgctttccctagaaaaacgtatgcaaagtagttct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1840 ttacgttctgaccaatgctttcatttgctttccctagaaaaacgtatgcaaagtagttct 1899
Query: 464 cattatcctcttctaatacttcctcggaaagctcaatggcatattcccaatccgaatctg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1900 cattatcctcttctaatacttcctcggaaagctcaatggcatattcccaatccgaatctg 1959
Query: 524 ctaatgcagtctttgcattcttcaacagattctttcactgctgacattgtttttctga-t 582
|||||||||||||||||||||||||||| ||| |||||||||||||| | |||||||| |
Sbjct: 1960 ctaatgcagtctttgcattcttcaacagtttc-ttcactgctgacatcg-ttttctgatt 2017
Query: 583 tactggaaaattatcccaaatctgtcgttaattaaaaactttgtac 628
|||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 2018 tactggaaaactatcccaaatctgtcgttaatcaaaaactttgtac 2063
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9485
Number of Sequences: 1807
Number of extensions: 9485
Number of successful extensions: 112
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)