BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZH12RM1.SCF screened BAC_end
(1145 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig900 716 0.0
>3x_Contig900
Length = 3046
Score = 716 bits (361), Expect = 0.0
Identities = 418/433 (96%), Gaps = 3/433 (0%)
Strand = Plus / Minus
Query: 75 ctttgtaaaccggtgcaaatattctagagccctgtacggagtgtcaatatgtggatatct 134
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1382 ctttgtaaaccggtgcaaatatacgagagccctgtacggagtgtcaatatgtggatatct 1323
Query: 135 atttgtcaggtaaattaatcctcaactgcactttaattcggactttcaatgtctgcgtat 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 atttgtcaggtaaattaatcctcaactgcactttaattcggactttcaatgtctgcgtat 1263
Query: 195 aatgtgctctttgatcttcaattggtcatttcaccaaagctcataccatacttttattta 254
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 1262 aatgtgctctttgatcttcaattggtcatttcaccaaagctcataccatacaaa-accta 1204
Query: 255 ttatgagattccaacaagatttcggtacaacttgaaaaatttgtatacaacacccagaca 314
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 gtatgagattccaagaagatttcggtacaacttgaaaaatttgtatacaacacccagaca 1144
Query: 315 ctacactataaacatacttcaaatatgtaaagaatactctccaaaggcagccgtaaaagg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 ctacactataaacatacttcaaatatgtaaagaatactctccaaaggcagccgtaaaagg 1084
Query: 375 atgtcatatatctaggtgtggccagctcttatgaactactgagttgttaaactgaataat 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 atgtcatatatctaggtgtggccagctcttatgaactactgagttgttaaactgaataat 1024
Query: 435 aatctaacagtactgtacgtattcttttttattccataattgattattttgcctattttt 494
||||||||||||||||||||||||| |||||||| | |||||| ||||||||||| ||||
Sbjct: 1023 aatctaacagtactgtacgtattctcttttattcgagaattga-tattttgccta-tttt 966
Query: 495 ttctcaattcttt 507
|||||||||||||
Sbjct: 965 ttctcaattcttt 953
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,399
Number of Sequences: 1807
Number of extensions: 10399
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 1145
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1129
effective length of database: 10,329,639
effective search space: 11662162431
effective search space used: 11662162431
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)