BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA01FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1459 1275 0.0
>3x_Contig1459
Length = 6711
Score = 1275 bits (643), Expect = 0.0
Identities = 691/706 (97%), Gaps = 1/706 (0%)
Strand = Plus / Minus
Query: 87 gaagttaatgttgtcagagaaagaaccggaagaagagtcagaagtaaatgtgacgacatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3278 gaagttaatgttgtcagagaaagaaccggaagaagagtcagaagtaaatgtgacgacatc 3219
Query: 147 tgggcttggaataccagcgataccgtcagcagtcaaagaaccaacgaattcgatggtagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3218 tgggcttggaataccagcgataccgtcagcagtcaaagaaccaacgaattcgatggtagc 3159
Query: 207 agcaccgctgtctggaacggaggtaaattcaacagtgaagttgttaccgtcgttggtaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3158 agcaccgctgtctggaacggaggtaaattcaacagtgaagttgttaccgtcgttggtaat 3099
Query: 267 agtaccgtagtcgaattcaatggattctgggaaaccaccgaattctgcaggtggagcaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3098 agtaccgtagtcgaattcaatggattctgggaaaccaccgaattctgcaggtggagcaaa 3039
Query: 327 ccaaactgaaccggtttcagcggcgtcgatgtcaattgtgaagatgaatggggcgtaacg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3038 ccaaactgaaccggtttcagcggcgtcgatgtcaattgtgaagatgaatggggcgtaacg 2979
Query: 387 gtcgtaagagtccttagaaccagtccagccgtttagaatgttgatatcagcaacatcaag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2978 gtcgtaagagtccttagaaccagtccagccgtttagaatgttgatatcagcaacatcaag 2919
Query: 447 accagtgactggagaagttggagttgaagatggttcaacagaagaggtgtttgaaaaaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2918 accagtgactggagaagttggagttgaagatggttcaacagaagaggtgtttgaaaaaat 2859
Query: 507 ttgagcgttggcggtagccaagaaacccaatgtagcagattgaattaaagcgaaagaaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2858 ttgagcgttggcggtagccaagaaacccaatgtagcagattgaattaaagcgaaagaaga 2799
Query: 567 gagtttcattggggcaatggctagttcttattagtcacgtagcttacttttctaaactat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2798 gagtttcattggggcaatggctagttcttattagtcacgtagcttacttttctaaactat 2739
Query: 627 attaacagaaatatgcgaaggctatgccaacaaataaccaaagtcaaatagggaatggta 686
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2738 atcaacagaaatatgcgaaggctaggccaacaaataaccaaagtcaaatagggaatggta 2679
Query: 687 aagtcgctggaaaagcagngcctttatatatttcaggatattaagaacattattcgattt 746
||||||| | ||| |||| || ||||||||||||||||||| |||||||||||||||||
Sbjct: 2678 aagtcgcggaaaaggcagtgcttttatatatttcaggatatcaagaacattattcgatta 2619
Query: 747 ttatccatcacataattaatgccataaaattatacaccatgaataa 792
| ||||||||||||||||| | || ||||| | |||||||||||||
Sbjct: 2618 taatccatcacataattaaag-caaaaaataaaacaccatgaataa 2574
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5947
Number of Sequences: 1807
Number of extensions: 5947
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)