BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZA01RM1.SCF screened BAC_end
         (954 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1642                                                         680   0.0  

>3x_Contig1642 
          Length = 16641

 Score =  680 bits (343), Expect = 0.0
 Identities = 382/395 (96%)
 Strand = Plus / Minus

                                                                        
Query: 41   caagctttggcgttgctgctatttgtttatttaagcatcatactggaatttccaagacag 100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7821 caagctttggcgttgctgctatttgtttatttaagcatcatactggaatttccaagacag 7762

                                                                        
Query: 101  caatattgtacgggttagcacacttcttacgtactgcttactatgttgactatttgaaaa 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7761 caatattgtacgggttagcacacttcttacgtactgcttactatgttgactatttgaaaa 7702

                                                                        
Query: 161  gaagaatgaagtagtaccgtttcgaagattattttttctttgtgactatacaaatgatat 220
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 7701 gaagaatgaagtagtaccgtttcgaagattattttttctttgtcactatacaaatgacat 7642

                                                                        
Query: 221  gcttgtgccactgagcaatgtgataaagggaacttagtgttccggttctaatgtttgctg 280
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7641 gcttgtgccactgagcaatgtgataaagggaacttagtgttccggttctaatgttttctg 7582

                                                                        
Query: 281  gttttgcaaaagctatgagctttattttataaaaagaatagaatatattttataccttaa 340
            |||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct: 7581 gttttgcaaaagctatgagctttagtttataaaaagaatagaagatattttagaccttaa 7522

                                                                        
Query: 341  actatcggtggcgtagattgtaagtttgaacgttctatgtacgtttgtatgcgattattg 400
            |||| |||||||||||| |||||||||||||||||||| ||||||| ||||||| |||| 
Sbjct: 7521 actagcggtggcgtagagtgtaagtttgaacgttctatatacgtttctatgcgagtattt 7462

                                               
Query: 401  ttttttgctttactacgtaaatatcgcttatgcat 435
            |||||| ||||||||||||||||||||||||||||
Sbjct: 7461 ttttttcctttactacgtaaatatcgcttatgcat 7427


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5175
Number of Sequences: 1807
Number of extensions: 5175
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)