BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA02FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1425 1487 0.0
>3x_Contig1425
Length = 7919
Score = 1487 bits (750), Expect = 0.0
Identities = 811/825 (98%), Gaps = 5/825 (0%)
Strand = Plus / Minus
Query: 88 cgatatctttgtcaacggctggccttttgaaaggtcatctataataattgtgattcttgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4770 cgatatctttgtcaacggctggccttttgaaaggtcatctataataattgtgattcttgt 4711
Query: 148 atatagctttaatcccgtatttttctctagttcatcaaaatgcgatagatcgataggatt 207
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 4710 atatagctttaatcccgtagatttcactagttcatcaaaatgcgatagatcgataggatt 4651
Query: 208 catatttttgattgantttgggaatttatcctgttggtttactgtgaaatttaaagctat 267
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4650 catatcattgattgattttgggaatttatcctgttggtttactgtgaaatttaaagctat 4591
Query: 268 gtgagtgtaccctagtgtatgcaatgtcgctagagtcttgtgcagcgttttaatctcctt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4590 gtgagtgtaccctagtgtatgcaatgtcgctagagtcttgtgcagcgttttaatctcctt 4531
Query: 328 cgtggaaggcggtgttgcaaaatccttctgtggccaaggaacgtttaaatcaactaacat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4530 cgtggaaggcggtgttgcaaaatccttctgtggccaaggaacgtttaaatcaactaacat 4471
Query: 388 cctttcaaatagctattttgctttgcaaatttggaaggagtatttacaagtgattcaaca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4470 cctttcaaatagctattttgctttgcaaatttggaaggagtatttacaagtgattcaaca 4411
Query: 448 gaaacttttgtttccatttgagtgtccagcatacctcatctcatgctcatgtttcattat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4410 gaaacttttgtttccatttgagtgtccagcatacctcatctcatgctcatgtttcattat 4351
Query: 508 ttactagattttttttttggtagattattgtaatgtcttttccgaaaaaattatacttga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4350 ttactagattttttttttggtagattattgtaatgtcttttccgaaaaaattatacttga 4291
Query: 568 agatattataacatactatgaagtacaatcctaacttgaaagcccaactgttgaaaaata 627
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4290 agatattataacatactatgaagtacaatccttacttgaaagcccaactgttgaaaaata 4231
Query: 628 caactttaaacttcatccaatcggccatgtcacaatgtttttgagtatgagaacaatatt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4230 caactttaaacttcatccaatcggccatgtcacaatgtttttgagtatgagaacaatatt 4171
Query: 688 atctaaatagaataattgtcagtttatttatagagtacataccttactatttgttccata 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4170 atctaaatagaataattgtcagtttatttatagagtacataccttactatttgttccata 4111
Query: 748 aagtgataaaatgtccggtaaaataggtttgatgaaaaacagcgcccaaaaaggaaccat 807
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4110 aagtgataaaatgtccgttaaaataggtttgatgaaaaacagcgcccaaaaaggaaccat 4051
Query: 808 tatgatctatgtgcataaatatcattgcgtagagttcacatcttctgaaatctttcggta 867
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4050 tatgatctatgtgcataaatatcattgcgtagagttcacatcttctg-aatctttcggt- 3993
Query: 868 aaagaaggt-agtgcttgaccttgatttacagcttaccgccccag 911
||||||||| ||||| ||| ||||||||||||| |||||||||||
Sbjct: 3992 aaagaaggtaagtgc-tgatcttgatttacagc-taccgccccag 3950
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8372
Number of Sequences: 1807
Number of extensions: 8372
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)