BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA02RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig614 1467 0.0
>3x_Contig614
Length = 2043
Score = 1467 bits (740), Expect = 0.0
Identities = 849/870 (97%), Gaps = 14/870 (1%)
Strand = Plus / Minus
Query: 51 ctttactattctcattgcatctgtcatgaacggtagaagatgaaatatcaacttctggtg 110
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1432 ctttactattctcattgcatctg-catgaacggtagaagatgaaatatcaacttctggtg 1374
Query: 111 gctgtaacggcactgcagaacccataggaggcttgatagacttcgattgttgttgaaaat 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 gctgtaacggcactgcagaacccataggaggcttgatagacttcgattgttgttgaaaat 1314
Query: 171 gtggtttcatcgcagacaattgctgcagtggaagtagattgctcaaagctgggtcactta 230
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 gtggtagcatcgcagacaattgctgcagtggaagtagattgctcaaagctgggtcactta 1254
Query: 231 tagcagtcgcaacgatatcagcggtagaattgggcaaagcagtaccacttgtctctgcta 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 tagcagtcgcaacgatatcagcggtagaattgggcaaagcagtaccacttgtctctgcta 1194
Query: 291 gcacttgcgtagcgctgactttattgccgttgttcatctctgagatagaataaacacatt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 gcacttgcgtagcgctgactttattgccgttgttcatctctgagatagaataaacacatt 1134
Query: 351 ccgtgctaagtgcgacacattttgaacatggattacctctgtcacatcgagtttttctcc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 ccgtgctaagtgcgacacattttgaacatggattacctctgtcacatcgagtttttctcc 1074
Query: 411 tacgacaagcatagcacacgtatgagactctatttcgcttcataacacgtttgttaccag 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 tacgacaagcatagcacacgtatgagactctatttcgcttcataacacgtttgttaccag 1014
Query: 471 cattgttcttattaacacccacggtactactagagttgttgcttgtattagaacttggtg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 cattgttcttattaacacccacggtactactagagttgttgcttgtattagaacttggtg 954
Query: 531 tcgacttatctatagtgctaggctgactatgtgaatggctgtgcgaataactctcatcag 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 tcgacttatctatagtgctaggctgactatgtgaatggctgtgcgaataactctcatcag 894
Query: 591 aagtaggtgatccacgattattagcctgagaaacggtattccattcctttggtgccatga 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 aagtaggtgatccacgattattagcctgagaaacggtattccattcctttggtgccatga 834
Query: 651 tcagatatacaagtcacaatggtacctgtctattcgattgtatacgtgtttttttttgta 710
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 833 tcagatatacaagtcacaatggtacctgtctattcgattgtatacgtg-ttttttttgta 775
Query: 711 ttnnctgtt-gtcgatcgaaaaccaatccatgagtgtgatgagattacttaataagtaaa 769
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tt--ctgttagtcgatcgaaaaccaatccatgagtgtgatgagattacttaataagtaaa 717
Query: 770 gtaattccatatcgatgattctttggttttatatatatacttacagaaataatcgtaaaa 829
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||
Sbjct: 716 gtaattccatatcgatgattctttgtttttatatatatacatacag-aataatcgtagaa 658
Query: 830 taagcaggggaaaaagcctgagaaaccctaaaagatataaggtacaaccatcctttttgc 889
|||||| ||||||||| |||||||| ||||||||| |||||||||||||||| | ||||
Sbjct: 657 taagca-gggaaaaag-ctgagaaa-cctaaaaga-ataaggtacaaccatc--tattgc 604
Query: 890 gactttttttttgttaggaattaaaaaaaa 919
|||| ||||||| ||| |||||||||||||
Sbjct: 603 gactattttttt-tta-gaattaaaaaaaa 576
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7952
Number of Sequences: 1807
Number of extensions: 7952
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)