BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA04FM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1307 1308 0.0
>3x_Contig1307
Length = 7280
Score = 1308 bits (660), Expect = 0.0
Identities = 747/771 (96%), Gaps = 4/771 (0%)
Strand = Plus / Minus
Query: 85 agaactttaccaatatacaattaccacatgataaagaggatcttccagcatctacacaga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6016 agaactttaccaatatacaattaccacatgataaagaggatcttccagcatctacacaga 5957
Query: 145 gttcataatcatatggataccaaccgtatggatgctagcaatcttgctattgttttctca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5956 gttcataatcatatggataccaaccgtatggatgctagcaatcttgctattgttttctca 5897
Query: 205 atgagtttcatttttcaagatgatctggctaacagtatgggaccaagtttaggtttattg 264
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5896 atgagtttcatcaatcaagatgatctggctaacagtatgggaccaagtttaggtttattg 5837
Query: 265 cagagcctactgcaaaagttcataagatatccagatacctatttcgtctatgaatagact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5836 cagagcctactgcaaaagttcataagatatccagatacctatttcgtctatgaatagact 5777
Query: 325 ataataatatataataactactgcgtaatatataataacattgtttatttacatgataaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5776 ataataatatataataactactgcgtaatatataataacattgtttatttacatgataaa 5717
Query: 385 ttcgagatttagtgacaacaatcaggtgtgtgaaaagatctctacaaaggtacttctggt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5716 ttcgagatttagtgacaacaatcaggtgtgtgaaaagatctctacaaaggtacttctggt 5657
Query: 445 gattatttcttgcgaacaatttttattctttggttttctttttcttttttggccaaatcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5656 gattatttcttgcgaacaatttttattctttggttttctttttcttttttggccaaatcc 5597
Query: 505 ttcattttatcatcttgttctttcatcatagctctcttctcagcttggtctttcgctttc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5596 ttcattttatcatcttgttctttcatcatagctctcttctcagcttggtctttcgctttc 5537
Query: 565 tgaatattctctctaaaactttcgaacacacctttctgagggccttggttttctggtgct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5536 tgaatattctctctaaaactttcgaacacacctttctgagggccttggttttctggtgct 5477
Query: 625 ggatggtttaccacttcggctatattcaaaaattttctagcaggttgatttccttaaaag 684
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct: 5476 ggatggtttaccacttcggctatattcaaaaattttctagcagtttga-ttccttagaag 5418
Query: 685 taaagtttgaatcattgaacaaacaccgtttactggcaaaaataaaacaacacctgctga 744
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 5417 taaagtttgaatcattgaacaaacaccgtttactgccaaatataaaacaacacctgctga 5358
Query: 745 tagattcatggtaacagggtattgtttaaaatgggcaaatagngaaaaacctttttattt 804
|||||||||||||||| |||| || |||||||||||||||| ||||||||||| ||
Sbjct: 5357 tagattcatggtaaca-ggta-tggttaaaatgggcaaataagtgaaaacctttttcatt 5300
Query: 805 tgggaagaaaattgttgcggcaccaaaatcaccacctttcttaaccaatgc 855
|| | ||||||||||||| |||||| | |||||||||||| || |||||||
Sbjct: 5299 tgtggagaaaattgttgc-gcaccagattcaccacctttcctagccaatgc 5250
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8482
Number of Sequences: 1807
Number of extensions: 8482
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)