BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA04RM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig348 603 e-172
3x_Contig435 194 2e-49
>3x_Contig348
Length = 1001
Score = 603 bits (304), Expect = e-172
Identities = 402/428 (93%), Gaps = 5/428 (1%)
Strand = Plus / Plus
Query: 228 ctcagttcttgaaattcgacagatttttatgtgacgttccatggtctggtgacggtacta 287
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct: 17 ctcagttcttgaaattcgacagagttttatgtgacgttccatgttctggtgacggtagta 76
Query: 288 tgataaat-aacgtcaacgtttggaaggattggaacactggatctggtctaggtttacac 346
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 tgagaaagcaacgtcaacgtttggaaggattggaacactggatctggtctaggtttacac 136
Query: 347 attgtgcaattgaatatctatggaaagatgtctaaatttgttgaaagaaagtggtaaact 406
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 137 attgtgcaattgaatatct-tggaaagaggtctaaatttgttgaaagaaggtggtaaact 195
Query: 407 tgtatactccacttgttctttgaatccaattgaaaacgaagcatttattgctgccgcttt 466
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 196 tgtatactccacttgttctttgaatccaattgaaaacgaagcagttattgctgccgcttt 255
Query: 467 gataaagtggggtgataaggtaagataggtcaactgtgatgatcaattgccagttttagt 526
|| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 256 gagaaggtggggtgataaggtaagattggtcaactgtgatgatcaattgccaggtttagt 315
Query: 527 cagatctaaaggtatcactgaatggaatgtatacgacatacaatttccatttagataaaa 586
||||||||| ||||||||||||||||| |||||||||| |||||| | | ||||| ||||
Sbjct: 316 cagatctaagggtatcactgaatggaaggtatacgacaaacaattccaagttagagaaaa 375
Query: 587 aggacattaaaaactgtttggattcatgtgttcccaccaactgcagaatgaagttgaaaa 646
|||||| | ||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 376 aggaca-tgaaaactgtttggattcatg-gttcccaccaactgcagaa-gaggttgaaaa 432
Query: 647 attccatt 654
||||||||
Sbjct: 433 attccatt 440
>3x_Contig435
Length = 1599
Score = 194 bits (98), Expect = 2e-49
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 44 gctttacatgccgaatctgatgaaccttctgggtttgtcatagctaacgatgcagactat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gctttacatgccgaatctgatgaaccttctgggtttgtcatagctaacgatgcagactat 39
Query: 104 aagagatctcatatgttggtgcaccaattgaaacgttt 141
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 aagagatctcatatgttggtgcaccaattgaaacgttt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7454
Number of Sequences: 1807
Number of extensions: 7454
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)