BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZA05FM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1127                                                        1639   0.0  

>3x_Contig1127 
          Length = 4949

 Score = 1639 bits (827), Expect = 0.0
 Identities = 845/850 (99%), Gaps = 1/850 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   tgaaaaagataatatatcccaattactcgatccatatgaaagaagaacgaatagcaaggt 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3157 tgaaaaagataatatatcccaattactcgatccatatgaaagaagaacgaatagcaaggt 3216

                                                                        
Query: 147  actggcaggagacaatggactggagaaaggtcatcgttgagctacagcctgattcccata 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 actggcaggagacaatggactggagaaaggtcatcgttgagctacagcctgattcccata 3276

                                                                        
Query: 207  ataacatcattgttcgtcgcaggtttgttaattcattcggttggatagttgtcaatcata 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3277 ataacatcattgttcgtcgcaggtttgttaattcattcggttggatagttgtcaatcata 3336

                                                                        
Query: 267  ttgccgatgaacactttggatcgaaggcaatgatagaatgaatgatgactatagtaataa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3337 ttgccgatgaacactttggatcgaaggcaatgatagaatgaatgatgactatagtaataa 3396

                                                                        
Query: 327  taatatcattaaaagttcaactgtatataaataaaataaattagtagtctatagatcgcg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397 taatatcattaaaagttcaactgtatataaataaaataaattagtagtctatagatcgcg 3456

                                                                        
Query: 387  ttctcagaggatacgaggcttcacacctctggtatcttttcctttttgtggttggtggtt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3457 ttctcagaggatacgaggcttcacacctctggtatcttttcctttttgtggttggtggtt 3516

                                                                        
Query: 447  tcattcgttactaggatctaagggatcgatcttgagtactttatctggattcaacagtct 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3517 tcattcgttactaggatctaagggatcgatcttgagtactttatctggattcaacagtct 3576

                                                                        
Query: 507  ctttggatctatagctaactttactttccgcattagatcgacagtatctgatcctaattc 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3577 ctttggatctatagctaactttactttccgcattagatcgacagtatctgatcctaattc 3636

                                                                        
Query: 567  atcctccaaaaactttcttttaccagttccaataccatgctccccagaacacgtaccttc 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3637 atcctccaaaaactttcttttaccagttccaataccatgctccccagaacacgtaccttc 3696

                                                                        
Query: 627  atttttaagagtaacagcattgatttcagctaccagctgtttgcaaatttcaaactgatc 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3697 atttttaagagtaacagcattgatttcagctaccagctgtttgcaaatttcaaactgatc 3756

                                                                        
Query: 687  cggttcatagaaaatatcatagtggatattcccgtcaccaacatgacccaaggtcatatg 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3757 cggttcatagaaaatatcatagtggatattcccgtcaccaacatgacccaaggtcatatg 3816

                                                                        
Query: 747  agttagagggtaagttgctgtgattttatccaattcttcgagagtagctgcaagattgga 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3817 agttagagggtaagttgctgtgattttatccaattcttcgagagtagctgcaagattgga 3876

                                                                        
Query: 807  aagtggcactgcacaatctgtgatccacatcttttgcgttttcatcaatttcattggaag 866
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct: 3877 aagtggcactgcacaatctgtgatccacatc-tttgcgttttcatcaatttcattgaagg 3935

                                                                        
Query: 867  catagtccaacattagnaataaagcattctttctagttgaaaaaagctcctctgcctctt 926
            ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3936 catagtccaacattagatataaagcattctttctagttgaaaaaagctcctctgcctctt 3995

                      
Query: 927  gttcgttctt 936
            ||||||||||
Sbjct: 3996 gttcgttctt 4005


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7320
Number of Sequences: 1807
Number of extensions: 7320
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)