BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZA05RM1.SCF screened BAC_end
         (949 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig596                                                         1197   0.0  

>3x_Contig596 
          Length = 2286

 Score = 1197 bits (604), Expect = 0.0
 Identities = 658/672 (97%), Gaps = 3/672 (0%)
 Strand = Plus / Minus

                                                                       
Query: 47  ttaagttaagaagtaccactaaatggcccaacttgttttgaagattttcattgctgagca 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ttaagttaagaagtaccactaaatggcccaacttgttttgaagattttcattgctgagca 895

                                                                       
Query: 107 tatcaacaaatgacttagcgacttcgttaaaaattcttaattcaatagaaagatcagcag 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tatcaacaaatgacttagcgacttcgttaaaaattcttaattcaatagaaagatcagcag 835

                                                                       
Query: 167 atgctaacgtcattttcctctggtgtgatagtctcaatatcgccctgaatattatggaaa 226
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 834 atgctaacgtcattttcctctggtgtgatagtctcaatatcgccctgaagattatggaaa 775

                                                                       
Query: 227 tgcaggactgcgtggtatggaacaaaaacctgttctgaagagtatttttgaacttagcag 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tgcaggactgcgtggtatggaacaaaaacctgttctgaagagtatttttgaacttagcag 715

                                                                       
Query: 287 ccgtgttgtcggttttcacatcattttcagctttagcccccttataaagtagtaaagaag 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccgtgttgtcggttttcacatcattttcagctttagcccccttataaagtagtaaagaag 655

                                                                       
Query: 347 gagtttcgggggatgtcgccggtcttgtttgttctgaaactatgattggcaagcatccac 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gagtttcgggggatgtcgccggtcttgtttgttctgaaactatgattggcaagcatccac 595

                                                                       
Query: 407 ggatgtaatactcttccaacgcacacctttcaaaagttgtccttaaaagatggatcaaag 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ggatgtaatactcttccaacgcacacctttcaaaagttgtccttaaaagatggatcaaag 535

                                                                       
Query: 467 ataacccgttctcgtcaaagtattcgagtatttgatgaactctttccggaaacaatgaaa 526
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaaacccgttctcgtcaaagtattcgagtatttgatgaactctttccggaaacaatgaaa 475

                                                                       
Query: 527 agcggtcaatgtacacagaggtaattgtggatacaatgacttgtaagattttcacttttt 586
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 474 agcggtcaatgtacacagaggtaattgtggatacaatgacttgtaagatattcacttttc 415

                                                                       
Query: 587 cgagcgtatttttcacagtatctggatcccaagctc-aaacatatgacttgtcctgatcg 645
             |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 414 gaagcgtattttccacagtatctggat-ccaagctcaaaacatatgacttgtcctgatcg 356

                                                                       
Query: 646 t-attgatgaagtcagaaagatcatccaaagttttttttaaaagtgctaattaggtaggg 704
           | |||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| 
Sbjct: 355 taattgatgaagtcagaaagatcatccaaagtatattttaaaagtgctaataaggtaggt 296

                       
Query: 705 agggcatatttg 716
           ||||||||||||
Sbjct: 295 agggcatatttg 284


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7636
Number of Sequences: 1807
Number of extensions: 7636
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)