BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA06RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 852 0.0
>3x_Contig1469
Length = 9240
Score = 852 bits (430), Expect = 0.0
Identities = 478/490 (97%), Gaps = 3/490 (0%)
Strand = Plus / Minus
Query: 232 tacatagtccttgtgcttttccaagaacccaaacttgcttctctcttgaacttgcgaccg 291
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9240 tacatagtccttgtgctttcccaagaacccaaacttgcttctctcttgaacttgcgaccg 9181
Query: 292 ctcacggtgctgtttcttctgcacagagtgctgcaggttacccattgttgtgttgttcgc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9180 ctcacggtgctgtttcttctgcacagagtgctgcaggttacccattgttgtgttgttcgc 9121
Query: 352 gttctggttctactcgagctgtgtctctgttgaagaattaagaccccgttgatagtctat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9120 gttctggttctactcgagctgtgtctctgttgaagaattaagaccccgttgatagtctat 9061
Query: 412 tcagctcttcgaacgtcatgtgtcaaacctatctcatctcatctcatcgctttaaagttt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9060 tcagctcttcgaacgtcatgtgtcaaacctatctcatctcatctcatcgctttaaagttt 9001
Query: 472 tcactttcgtttctttcactatgtacgtgtgcgggtaacgctcgatagattcccaaaact 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9000 tcactttcgtttctttcactatgtacgtgtgcgggtaacgctcgatagattcccaaaact 8941
Query: 532 cacaatatatcatcaccgtcatctcgacacacttgggcatacttgatatacctgttatta 591
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8940 cacaatatatcatcaccgtcatctcgacacacttggcaatacttgatatacctgttatta 8881
Query: 592 gccagttgtttccc-tcgggacccaagctcgacgttcaccatgtctcttgtgtccatttc 650
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8880 gccagttgtttcccttcgggacccaagctcgacgttcaccatgtctcttgtgtccatttc 8821
Query: 651 gggaaaagttcgtgccggtttggtgctgaaaagacatgtgggtttgttttacttggaact 710
|| ||||||||| ||||||||||||||||||||||| ||||||||| || |||||||
Sbjct: 8820 ggagggagttcgtgcaggtttggtgctgaaaagacatgt-ggtttgtttcac-tggaact 8763
Query: 711 tctaatgatc 720
||||||||||
Sbjct: 8762 tctaatgatc 8753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7214
Number of Sequences: 1807
Number of extensions: 7214
Number of successful extensions: 350
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)