BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA07RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1084 0.0
>3x_Contig1642
Length = 16641
Score = 1084 bits (547), Expect = 0.0
Identities = 571/579 (98%)
Strand = Plus / Minus
Query: 49 caacgaaagacgtgacgctggttgaggtaatgcagcagactcgtccactaccagtgccgg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12163 caacgaaagacgtgacgctggttgaggtaatgcagcagactcgtccactaccagtgccgg 12104
Query: 109 aaaatctagaaagtccattacagatatgagatctgctatttataattgagtgcaatgatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12103 aaaatctagaaagtccattacagatatgagatctgctatttataattgagtgcaatgatt 12044
Query: 169 agttagtatgtcagaatcctgatttcgcgagtagtttaatgtctctttaatacaatttgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12043 agttagtatgtcagaatcctgatttcgcgagtagtttaatgtctctttaatacaatttgt 11984
Query: 229 atgactttctatttcgaaaaatgaaagatttaggtttttcgtatttattgaatcggttta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11983 atgactttctatttcgaaaaatgaaagatttaggtttttcgtatttattgaatcggttta 11924
Query: 289 tatatggtatgtgtgtaattgagtattgtacaattcaaaacataaacaaagtaaagatta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11923 tatatggtatgtgtgtaattgagtattgtacaattcaaaacataaacaaagtaaagatta 11864
Query: 349 ttattgtttgaatctaccaccagtggagactacgtacctaattaaaataagggacaataa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11863 ttattgtttgaatctaccaccagtggagactacgtacctaattaaaataagggacaataa 11804
Query: 409 gcatctatagtatgaatgaaaaaaagtgaggtattcttcaatatcagaacctggttctaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11803 gcatctatagtatgaatgaaaaaaagtgaggtattcttcaatatcagaacctggttctaa 11744
Query: 469 caaataatataataaagtaatttaagttgaaaaggccactgtcacgataatgtcatcctt 528
|||| |||| |||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 11743 caaagaatagaataaagtaatttaagttgaaaaggccactgtcacgataaggtcagcctt 11684
Query: 529 gttgaaaacaatgcgtgcgccgtttttcgttcatgatattcttgatttgaattttatctt 588
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11683 gttgaaaacaatgcgtgcgccgtttttcgttcatgatattcttgatttgaatattatctt 11624
Query: 589 tttgggtcatctaagtatgaggtgcttatttcatcaaac 627
||||||||||||||||||||| | ||||| |||||||||
Sbjct: 11623 tttgggtcatctaagtatgagtttcttatatcatcaaac 11585
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8241
Number of Sequences: 1807
Number of extensions: 8241
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)