BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA08FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1584 0.0
>3x_Contig1765
Length = 24733
Score = 1584 bits (799), Expect = 0.0
Identities = 830/838 (99%), Gaps = 2/838 (0%)
Strand = Plus / Minus
Query: 86 caattgatctactacactaacgtaatcctctgcaagtcccggtttattgtaaaatgcttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10966 caattgatctactacactaacgtaatcctctgcaagtcccggtttattgtaaaatgcttc 10907
Query: 146 actggtataatacgtctctttttcgttccaatactctggaatgatagtcgtagcaagtat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10906 actggtataatacgtctctttttcgttccaatactctggaatgatagtcgtagcaagtat 10847
Query: 206 cggataccttataaacaaagcccttagggcatgggccaattgcaactcagaagctgcact 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10846 cggataccttagaaacaaagcccttagggcatgggccaattgcaactcagaagctgcact 10787
Query: 266 tttcaactcaccgtgcactacaaaattcgagtacagtttttgacgatgttccatcaataa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10786 tttcaactcaccgtgcactacaaaattcgagtacagtttttgacgatgttccatcaataa 10727
Query: 326 gacttcctcaacataaccagcacgtctggcatggccgcgctctaacttttttgatgataa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10726 gacttcctcaacataaccagcacgtctggcatggccgcgctctaacttttttgatgataa 10667
Query: 386 acacaccgaacccatttgtttattatggcctttccactaataatagaatcgcggttcgtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10666 acacaccgaacccatttgtttattatggcctttccactaataatagaatcgcggttcgtt 10607
Query: 446 gtgtgattcctattgatattgaaatactgtttctgaatgatgcacgatgcctgacgaatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10606 gtgtgattcctattgatattgaaatactgtttctgaatgatgcacgatgcctgacgaatc 10547
Query: 506 aaaaaccttaagaaaccttattttctttgtgcatattatgggaacgaagctcgaacaaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10546 aaaaaccttaagaaaccttattttctttgtgcatattatgggaacgaagctcgaacaaaa 10487
Query: 566 acaattcaataaagagttcaattatgtgagcctatgatggaagttgttttagaatagacc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10486 acaattcaataaagagttcaattatgtgagcctatgatggaagttgttttagaatagacc 10427
Query: 626 gactacgtattaaatatcaacgtatggatatcatgcaagaggtgatggaagttatagtcc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10426 gactacgtattaaatatcaacgtatggatatcatgcaagaggtgatggaagttatagtcc 10367
Query: 686 tggatatttatacatttgatgaaaagtttttgcatcatttttcaattcctttatttctat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10366 tggatatttatacatttgatgaaaagtttttgcatcatttttcaattcctttatttctat 10307
Query: 746 tatagacgagaccgtacgaatcgttcgtttaaagtggaaacgacagtggttgtgaaaact 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10306 tatagacgagaccgtacgaatcgttcgtttaaagtggaaacgacagtggttgtgaaaact 10247
Query: 806 accatcggaattttagtgacgtttagaacaaag-acgaccaattggcacaatgtctatca 864
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10246 accatcggaattttagtgacgtttagaacaaagaacgaccaattggcacaatgtctatca 10187
Query: 865 aatagcacacgttacctccgtataaattccccatggacctnctacataggttcttcga 922
| |||||||| |||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 10186 ataagcacacg-tacctccgtataaattccccatggacgtcctacatagtttcttcga 10130
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6460
Number of Sequences: 1807
Number of extensions: 6460
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)