BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA10FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1723 1404 0.0
>3x_Contig1723
Length = 15177
Score = 1404 bits (708), Expect = 0.0
Identities = 782/802 (97%), Gaps = 4/802 (0%)
Strand = Plus / Minus
Query: 87 tggaccatgaagtcagaaat-aaggaattcgtgtttcggtaatagatccccatttaatta 145
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5294 tggaccatgaagtcagaaatcaaggaattcgtgtttcggtaatagatccccatttaatta 5235
Query: 146 aaacaccaatgttcagtaaggatttggaacccgatagacctttatcaatatactcagaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5234 aaacaccaatgttcagtaaggatttggaacccgatagacctttatcaatatactcagaga 5175
Query: 206 cgagaaaaaggttttttacttccatggagaaacaattggagagtgcggaggaaacttcgg 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5174 cgagaaaaaggttggctacttccatggagaaacaattggagagtgcggaggaaacttcgg 5115
Query: 266 tggttactgatacagtattatattccttgcaacagactgctcctcacattcgatataccc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5114 tggttactgatacagtattatattccttgcaacagactgctcctcacattcgatataccc 5055
Query: 326 ccggtagggcaaaaagattcgcttattttcgatactatgcaccctctgcaatctttgata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5054 ccggtagggcaaaaagattcgcttattttcgatactatgcaccctctgcaatctttgata 4995
Query: 386 gggttatccagaaatttttggacggttaaaaggaccccccaggtggacatcatgaggtgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4994 gggttatccagaaatttttggacggttaaaaggaccccccaggtggacatcatgaggtgt 4935
Query: 446 caatgacagtatgacgtggagcaattcataaaaataattaacaagtcttaggccttgaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4934 caatgacagtatgacgtggagcaattcataaaaataattaacaagtcttaggccttgaat 4875
Query: 506 gaatatacacttttctactgaagatgatagttaaggatggataaataaagaaaacattga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4874 gaatatacacttttctactgaagatgatagttaaggatggataaataaagaaaacattga 4815
Query: 566 caaattgtgtcctttatacagncttatatctctaaaagaaacacattcaccgttagagcg 625
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4814 caaattgtgtcctttatacagtcttatatctctaaaagaaacacattcaccgttagagcg 4755
Query: 626 gcacaaagaaatctattaaaatttaaacataagatgacatgtctgcgttatgcggaacgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4754 gcacaaagaaatctattaaaatttaaacataagatgacatgtctgcgttatgcggaacgg 4695
Query: 686 tttccggagaatgtatggggcattcgaaactacaaacaacattactgacttcaagtcgaa 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4694 tttccggagaatgtatggggcattcgaaactacaaacaacattactgacttcaagtcgta 4635
Query: 746 tgaaaaagttgcgattgaaaacggaacaatttctaggatatntcaaaatgtaa-taggaa 804
|||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||| |
Sbjct: 4634 tgaaaaagttgcgattgaaacggaaacaatttctaggatatttcaaaatgtaattagaag 4575
Query: 805 tttcattgcttttctcttcagctgcgtgtttgaaaaagttgtaagtggcctgacatttct 864
||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct: 4574 tttcattgc-tttctcttcagctgcgtgtttgaaaatgttgt-agttgcctgacatttct 4517
Query: 865 tcaagattgcaatggtgagtga 886
||| ||||||||||||||||
Sbjct: 4516 ccaaagttgcaatggtgagtga 4495
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6298
Number of Sequences: 1807
Number of extensions: 6298
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)