BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZA10RM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1358                                                        1009   0.0  

>3x_Contig1358 
          Length = 7912

 Score = 1009 bits (509), Expect = 0.0
 Identities = 643/677 (94%), Gaps = 8/677 (1%)
 Strand = Plus / Plus

                                                                       
Query: 48  ataacaatgtgtcctgaatacttagccgctgtactgatttccgaatccaaatacttttcc 107
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  ataacaatgt-tcctgaatacttagccgctgtactgatttccgaatccaaatacttttcc 146

                                                                       
Query: 108 ctgcttgttgataataagtcaattattgattagctattaatttctcttgtaataaagacc 167
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 147 ctgcttgttgataataagtcaattattgatgagctattaatttctcttgtaataaagacc 206

                                                                       
Query: 168 tacgaaaacaatgttattgcattcaaagaactactcaaattggtttccaaacaaaaagtt 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tacgaaaacaatgttattgcattcaaagaactactcaaattggtttccaaacaaaaagtt 266

                                                                       
Query: 228 atcgaggttagcagatgtatcatatcatcacaaaacgctcaaaccataaacttagttcaa 287
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| 
Sbjct: 267 atcgaggttagcagaggtatcatagcatcacaaaacgctcaaaccataaacttagttcag 326

                                                                       
Query: 288 gctttacacgatttgggcattttggatgaagtatttgagaagttgccgatcatggactcc 347
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 327 gctttacacgatttgggcattttggatgaagtatttgagaagttgccgatcagggactcc 386

                                                                       
Query: 348 ctaaaactatctcctacagctatgcatctcgggtatttgaaattctccgaatatattgaa 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctaaaactatctcctacagctatgcatctcgggtatttgaaattctccgaatatattgaa 446

                                                                       
Query: 408 agaaacatcaccttgaaaactttcgtaccaacattagactttatagatgctcaaacgaac 467
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 447 agaaacatcaccttgaaaactttcgtaccaacattagactttatagaggctcaaacgaac 506

                                                                       
Query: 468 attgatgaactggaccctgctttgaaatctgt-aaattgtaaaaccttcatttcttgcac 526
           |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 507 attgatgaactggaccctgctttgaaatctgtaaaattgttaaaccttcattccttgcac 566

                                                                       
Query: 527 attttgatttaccgcacggcgaatttgaaattttctgcagacaaaagggtcgccttaaac 586
           | |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 567 agtttgatttaccgcacggcgaatttgaaattatctgcagacgaaagggtcgccttaaac 626

                                                                       
Query: 587 aacgtcatatttaaaggctctaattcaactttcc-agattgatcaatttttggatatggg 645
           |||||||||||| |||||||||| ||| |||||| ||||||||||| || ||||||| ||
Sbjct: 627 aacgtcatattt-aaggctctaa-tcagctttccaagattgatcaa-ttatggatat-gg 682

                                                                       
Query: 646 ccataatgattccatcttcccaaatggggaccattgctctatttccaaaagattttgaaa 705
            ||| ||||| ||||| || ||||||||||||| |||||   ||||| | ||| ||||||
Sbjct: 683 tcatgatgatgccatcgtcgcaaatggggacca-tgctcctattccacaggatgttgaaa 741

                            
Query: 706 aaaaaaagcaaacatat 722
           | |||| ||||||||||
Sbjct: 742 agaaaatgcaaacatat 758


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,537
Number of Sequences: 1807
Number of extensions: 10537
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)