BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1622 1542 0.0
>3x_Contig1622
Length = 13445
Score = 1542 bits (778), Expect = 0.0
Identities = 807/813 (99%), Gaps = 3/813 (0%)
Strand = Plus / Plus
Query: 85 aacataaggacgtactgaacatagtctccctttaagaaatccttgtatatacattttcca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aacataaggacgtactgaacatagtctccctttaagaaatccttgtatatacattttcca 794
Query: 145 tatttcttattattaaagacattcttataagacgcctttgctgggttataattgcaactg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tatttcttattattaaagacattcttataagacgcctttgctgggttataattgcaactg 854
Query: 205 tattgcctgttcacctggcgatcactcttcaaattataaatccatctacctcattgaatt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tattgcctgttcacctggcgatcactcttcaaattataaatccatctacctcattgaatt 914
Query: 265 gttcaacatctctattcttccttttcctgcatactttaatgtttagaataaacgttggaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gttcaacatctctattcttccttttcctgcatactttaatgtttagaataaacgttggaa 974
Query: 325 aatgtatgtaataaaatgaaaaagtgtaaacgatgttatttaaagaaatgaagctaatat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 aatgtatgtaataaaatgaaaaagtgtaaacgatgttatttaaagaaatgaagctaatat 1034
Query: 385 tgaaatgtcacaaaacgggtataggttaattggggaaagataacttcaaaacgcgccttt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 tgaaatgtcacaaaacgggtataggttaattggggaaagataacttcaaaacgcgccttt 1094
Query: 445 gcagatagtctgataaactagacgacacagaggctttgttctgaccatccgcgatattcg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 gcagatagtctgataaactagacgacacagaggctttgttctgaccatccgcgatattcg 1154
Query: 505 aaatagatgcaatacgtgggcagagcttttgactctgtatcgaagacatggtcttcgatc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 aaatagatgcaatacgtgggcagagcttttgactctgtatcgaagacatggtcttcgatc 1214
Query: 565 aatccagcaacattatccggagcaatagatgttatagtggtagagcaccctgatggcgag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 aatccagcaacattatccggagcaatagatgttatagtggtagagcaccctgatggcgag 1274
Query: 625 ttggcatgctcgccatttcatgttaggtttggtaagtttcagatcttaaaaccatctcag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 ttggcatgctcgccatttcatgttaggtttggtaagtttcagatcttaaaaccatctcag 1334
Query: 685 aagaaggtagaggtcttggttaacggacaatcaacggacatcccaatgaagcttggagat 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 aagaaggtagaggtcttggttaacggacaatcaacggacatcccaatgaagcttggagat 1394
Query: 745 tctggtgaggcttatttcgtgtttgagactttagctgacttggaaggtatcccagacgaa 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1395 tctggtgaggcttatttcgtgtttgagactttagctgacttggaaggtatcccagacgaa 1454
Query: 805 tngatatcttcgcctgttgttagcgctgccagtagtccttgagagc-agccaacgacaaa 863
| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 1455 ttgatatcttcgcctgttgttagcgctgccagtagtcc-tgagagcaagccaacgacaaa 1513
Query: 864 -gatgatgcccttgaagaaccgcactttttaga 895
|||||||||||||||||||| ||||||||||
Sbjct: 1514 ggatgatgcccttgaagaacccgactttttaga 1546
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6186
Number of Sequences: 1807
Number of extensions: 6186
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)