BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA11RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1318 1255 0.0
>3x_Contig1318
Length = 8566
Score = 1255 bits (633), Expect = 0.0
Identities = 633/633 (100%)
Strand = Plus / Minus
Query: 48 tttttttttttgatttggaattttattctgttttgaatatccggattcaatcgcgactta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2986 tttttttttttgatttggaattttattctgttttgaatatccggattcaatcgcgactta 2927
Query: 108 aattacaacaaacatcatacatcttaaagagtatccgtattacatgtctgtgtttctaag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2926 aattacaacaaacatcatacatcttaaagagtatccgtattacatgtctgtgtttctaag 2867
Query: 168 taaactgctgagataggtattatacaatttcaagggcaacaagtcaattgaagacaggcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2866 taaactgctgagataggtattatacaatttcaagggcaacaagtcaattgaagacaggcc 2807
Query: 228 atgtcgtttgataaaccagagatccataccactagagtgttggcaggtgaagaactgtct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2806 atgtcgtttgataaaccagagatccataccactagagtgttggcaggtgaagaactgtct 2747
Query: 288 tccaatgaaaattcagagattatcaaatcttttaagagtttcatactggaattcagacta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2746 tccaatgaaaattcagagattatcaaatcttttaagagtttcatactggaattcagacta 2687
Query: 348 gattccaacttcgtttacagagaacaactgagaaataacctgttggttcataaatacttc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2686 gattccaacttcgtttacagagaacaactgagaaataacctgttggttcataaatacttc 2627
Query: 408 cttgacgtgaatacggagcatcttattggatataatgaagatctatacaaaaaattacag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2626 cttgacgtgaatacggagcatcttattggatataatgaagatctatacaaaaaattacag 2567
Query: 468 gatgaaccgatagatattatcccgttgttcgaacaagcaataactcaagtggcaaagaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2566 gatgaaccgatagatattatcccgttgttcgaacaagcaataactcaagtggcaaagaga 2507
Query: 528 attgttttgttatcgcaagattctgatattgatccagagacagcgttgtcgaacttccca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2506 attgttttgttatcgcaagattctgatattgatccagagacagcgttgtcgaacttccca 2447
Query: 588 ctatgtcagctcattttaaattccagttctatggaaattccattaagaagtttggattcg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2446 ctatgtcagctcattttaaattccagttctatggaaattccattaagaagtttggattcg 2387
Query: 648 gatcacgtttctaagatcgtcagaattacaggg 680
|||||||||||||||||||||||||||||||||
Sbjct: 2386 gatcacgtttctaagatcgtcagaattacaggg 2354
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,614
Number of Sequences: 1807
Number of extensions: 12614
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)