BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZA12FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1476 1463 0.0
>3x_Contig1476
Length = 8689
Score = 1463 bits (738), Expect = 0.0
Identities = 831/854 (97%), Gaps = 6/854 (0%)
Strand = Plus / Plus
Query: 86 aattgttggagcatacaatttagaatgacttctacaattttaccactcaattgaattcca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 aattgttggagcatacaatttagaatgacttctacaattttaccactcaattgaattcca 2006
Query: 146 attttgcaaaattttagacctaatcgatagttcgtatcctttatatactttaaaatccaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 attttgcaaaattttagacctaatcgatagttcgtatcctttatatactttaaaatccaa 2066
Query: 206 atcaaagtactttttccttaccccgaattaccaatacaaatgactagcctaagatgaaaa 265
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 atcaaagtaccaatgccttaccccgaattaccaatacaaatgactagcctaagatgaaaa 2126
Query: 266 ccttaagacagacacaagaaaatatactttcgaacaatgacaaatgttcaaaatgtataa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ccttaagacagacacaagaaaatatactttcgaacaatgacaaatgttcaaaatgtataa 2186
Query: 326 taatgtataatgatgtataataacattgatatttctgagggagtgctgatccttttgcaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 taatgtataatgatgtataataacattgatatttctgagggagtgctgatccttttgcaa 2246
Query: 386 cttactcatcttatataagctctcatcgggtcctgcaataaagttcctctccctttagta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 cttactcatcttatataagctctcatcgggtcctgcaataaagttcctctccctttagta 2306
Query: 446 agagctgacacattttttttttctgtctacatttaataagcaagtattcgcaacgagtgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 agagctgacacattttttttttctgtctacatttaataagcaagtattcgcaacgagtgt 2366
Query: 506 gatgcagggatgcttatcgtggtgcattaccctgattagtcagggtaataaactcagtgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 gatgcagggatgcttatcgtggtgcattaccctgattagtcagggtaataaactcagtgt 2426
Query: 566 ctgcttcaacacatttgacttttatggttttcagtcaagtaaatattgaaatccatatga 625
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2427 ctgcttcaacacatttgacttttatggttttcagtcaagtaaatattgacatccatatga 2486
Query: 626 aaggatgaacttattattcaattcagagtaattatttgttaataacgataacacattaca 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2487 caggatgaacttattattcaattcagagtaattatttgttaataacgataacacattaca 2546
Query: 686 ttctttattaatgattgttttcttggctaaaaaacgaataatattgatcatagacaactg 745
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2547 ttctttattaatga-tgttttcttggctaaaaaacgaataatattgatcatagacaactg 2605
Query: 746 cagtgatcgagcaaactacacctctgttataagaaatacgttatattggatattctggtg 805
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 2606 cagtgatcgagcaaactacacctc-gttataagacatacgttatattggatattctggtg 2664
Query: 806 aacgttttatatacttaagaaaaaaatacgattagaatag-ttgtccttgttaatcatca 864
||||||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 2665 aacgttttatatactaaggaaaaaaatacga-tagaatagtttgtccttgttaatcatca 2723
Query: 865 tagggtattttcaaatttaaggagaaaagtaaaagagc-ttccaggttttccttcggacc 923
|||| ||| |||||||||||||||| ||| |||||||| | | |||| | ||||||||||
Sbjct: 2724 taggttatcttcaaatttaaggagagaagaaaaagagcatacaaggtataccttcggacc 2783
Query: 924 -ttattcatacttt 936
|||||||||||||
Sbjct: 2784 tttattcatacttt 2797
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8929
Number of Sequences: 1807
Number of extensions: 8929
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)