BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB01FM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1632 303 3e-82
>3x_Contig1632
Length = 13927
Score = 303 bits (153), Expect = 3e-82
Identities = 184/193 (95%), Gaps = 1/193 (0%)
Strand = Plus / Minus
Query: 85 gcttcttaaggtatgaatccacacacaaacacactaactattagaaataaaagtttgtga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7152 gcttcttaaggtatgaatccacacacaaacacactaactattagaaataaaagtttgtga 7093
Query: 145 aaaaaacgtgtaataaagcagatcagatcttaattgattcaaaataaccaaagtattaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7092 aaaaaacgtgtaataaagcagatcagatcttaattgattcaaaataaccaaagtattaat 7033
Query: 205 aaaaaaaaaaaaagctttttttaactataccaaaccagaaaaaaaactagcttgaattga 264
||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 7032 aaaaaaaaaaaaagcaccagaaaactataccaaaccag-aaaaaaactagcttgaattga 6974
Query: 265 atatagtaaaagt 277
||||||| |||||
Sbjct: 6973 atatagttaaagt 6961
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,216
Number of Sequences: 1807
Number of extensions: 45216
Number of successful extensions: 3249
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)