BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB01RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1024 971 0.0
>3x_Contig1024
Length = 3867
Score = 971 bits (490), Expect = 0.0
Identities = 556/574 (96%), Gaps = 3/574 (0%)
Strand = Plus / Minus
Query: 51 cagatggttcaaaa-gggttaattcccctgcatgtttgttattgccaatctgatcaacct 109
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2416 cagatggttcaaaaagggttaattcccctgcatgtttgttattgccaatctgatcaacct 2357
Query: 110 tggactctgcaaaacagcttttctttacattaacccttgtaatattatttaattaatgga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2356 tggactctgcaaaacagcttttctttacattaacccttgtaatattatttaattaatgga 2297
Query: 170 ttgatacgcgttcatgttcaattgatgtccaaactcttgagtatctt-atcgttgattct 228
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 2296 ttgatacgcgttcatgttcaattgatgtccaaactcttgagtatgtttaacgttgattct 2237
Query: 229 tcatcaatggtttgatactttgagcccactccattgtacttccttaagccattggataaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2236 tcatcaatggtttgatactttgagcccactccattgtacttccttaagccattggataaa 2177
Query: 289 cttccatcaaaattgaccgcgtctttatcgtattggttaacaggatgcgtagcacttaag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2176 cttccatcaaaattgaccgcgtctttatcgtattggttaacaggatgcgtagcacttaag 2117
Query: 349 cgcgattgtgtatcaaaagactgtccattccaatattgttggttcaataacgaagacaag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2116 cgcgattgtgtatcaaaagactgtccattccaatattgttggttcaataacgaagacaag 2057
Query: 409 tccgtgtttggaataaaagatttttcaacgacgttttggccaccgaatgagaccaaactt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2056 tccgtgtttggaataaaagatttttcaacgacgttttggccaccgaatgagaccaaactt 1997
Query: 469 tgagtgtcaaagtctctctgaccagcatattgggtataactactgttggtggatggggct 528
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 1996 tgagtgtcaaagtctctctgaccagcatattgtgtataactactgttgttggatggggct 1937
Query: 529 tttctgggtgccctataaagtttcgtcaaatggacttggcagaagttgtaaattatccca 588
|| |||||||||||| || |||||||||| |||||| |||| ||||||||||||||| |
Sbjct: 1936 ttcctgggtgccctagaaggtttcgtcaattggactgtgcag-agttgtaaattatccaa 1878
Query: 589 aaacccttcaccaaaacaccctttttctctgaaa 622
|||||||||| ||| ||| || ||||||||||||
Sbjct: 1877 aaacccttcaacaagacaacccttttctctgaaa 1844
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7084
Number of Sequences: 1807
Number of extensions: 7084
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)