BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB02FM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 1483 0.0
>3x_Contig1553
Length = 8593
Score = 1483 bits (748), Expect = 0.0
Identities = 783/794 (98%), Gaps = 1/794 (0%)
Strand = Plus / Plus
Query: 94 tcacgtaattacagtgatattctatgcaaaccgcaggttatccatgaagaggaagatgag 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4099 tcacgtaattacagtgatattctatgcaaaccgcaggttatccatgaagaggaagatgag 4158
Query: 154 taagttatataataaaacaataactgcaactaagagtgttaataacaggaaaactttttt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4159 taagttatataataaaacaataactgcaactaagagtgttaataacaggaaaactttttt 4218
Query: 214 tttcttttatttatgcgaggtaaactgattcgctctcataatataaataggaacatgatg 273
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4219 tttcttttaaatatgcgaggtaaactgattcgctctcataatataaataggaacatgatg 4278
Query: 274 actcaaggtgagtatgacaagaactataatcattctgatttgcttctttcttctagatga 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4279 actcaaggtgagtatgacaagaactataatcattctgatttgcttctttcttctagatga 4338
Query: 334 tggcatgtggctgttacacatgatcctaagaattcatgagaaaatggtgtgctgatatga 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4339 tggcatgtggctgttacacatgatcctaagaattcatgagaaaatggtgtgctgatatga 4398
Query: 394 gaagttttgatgaccacttcaggtagaaccttccatctccatatcatttcgtattcgtca 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4399 gaagttttgatgaccacttcaggtagaaccttccatctccatatcatttcgtattcgtca 4458
Query: 454 cgttttccatgaatgtatattcttaggtattccaaatatacgatgtagaaataaacgccg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4459 cgttttccatgaatgtatattcttaggtattccaaatatacgatgtagaaataaacgccg 4518
Query: 514 aggccagtgagtaagtgccaccatccatgtaattctagcaatactcctagtggtaacctt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4519 aggccagtgagtaagtgccaccatccatgtaattctagcaatactcctagtggtaacctt 4578
Query: 574 aaatatgatcttctaatagtgatccaaaactgacagaaatgaacatcaagttgccagacg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4579 aaatatgatcttctaatagtgatccaaaactgacagaaatgaacatcaagttgccagacg 4638
Query: 634 aaataaccagccagaaatatggtgataccaagtaacatagcattttgtaggttacgttta 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4639 aaataaccagccagaaatatggtgataccaagtaacatagcattttgtaggttacgttta 4698
Query: 694 gcaaccggatcgtttacaaactgtgtggtgagtttgaaggcaaaccaaataacgatagcg 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4699 gcaaccggatcgtttacaaactgtgtggtgagtttgaaggcaaaccaaataacgatagcg 4758
Query: 754 ttgattagagcgtaaccagcctgatggatcgttggattcttg-aaatgaggtatatagcc 812
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4759 ttgattagagcgtaaccagcctgatggatcgttggattcttgaaaatgaggtatatagcc 4818
Query: 813 ggtagtaaattagcaccccataagatggttaatccgacagtccattgntttctnctggtg 872
| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 4819 gtaagtaaattagcacccataaagatggttaatccgacagtccattgttttctcctggtg 4878
Query: 873 ggagaactgatcct 886
||||| ||||||||
Sbjct: 4879 ggagacctgatcct 4892
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6781
Number of Sequences: 1807
Number of extensions: 6781
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)