BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB02RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1239 0.0
>3x_Contig1806
Length = 53694
Score = 1239 bits (625), Expect = 0.0
Identities = 732/761 (96%), Gaps = 5/761 (0%)
Strand = Plus / Minus
Query: 46 tacaaagacgttacgatttcattttagatagaaagaacattttccaaaaactataccaat 105
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8392 tacaaagacgttacgattccattttagatagaaagaacattttccaaaaactataccaat 8333
Query: 106 tgaagttggatgacaacggtaaactaattcagtaatgataccacgtagatacagttgagt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8332 tgaagttggatgacaacggtaaactaattcagtaatgataccacgtagatacagttgagt 8273
Query: 166 tttctctctgggtatttgctagagattatgtacactatacaaaaaatagt-tattgctag 224
|||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||
Sbjct: 8272 tttctctctgggtatttgctagagattatgtacactatacaaaaaacaatataatgctag 8213
Query: 225 atgctactgaccccatacgttttagagactagttccttttaccttttttcttactcacaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8212 atgctactgaccccatacgttttagagactagttccttttaccttttttcttactcacaa 8153
Query: 285 cttggaattcccaatcatcagcgcttccctgtggaagagcaagagcttctgaccatgtta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8152 cttggaattcccaatcatcagcgcttccctgtggaagagcaagagcttctgaccatgtta 8093
Query: 345 aaggatcattcaatgatttctcgcattcaatacgtcttttaataaattctgatgcaaagg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8092 aaggatcattcaatgatttctcgcattcaatacgtcttttaataaattctgatgcaaagg 8033
Query: 405 aacgaccttccatcactgaactgttagcgtagatagtatcagagatgatttccttggaat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8032 aacgaccttccatcactgaactgttagcgtagatagtatcagagatgatttccttggaat 7973
Query: 465 ccatgcttggtggtaaagagagtaacatctctaaaacagaatccactttaacaccaggtg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7972 ccatgcttggtggtaaagagagtaacatctctaaaacagaatccactttaacaccaggtg 7913
Query: 525 ctagtttcatttgagatctacaccagctcaaaaattgcctccttgcagaagtggattgat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7912 ctagtttcatttgagatctacaccagctcaaaaattgcctccttgcagaagtggattgat 7853
Query: 585 tacctggataattgattggagaaga-gtaacaccctttttcagagttgggatggaaattg 643
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7852 tacctgaataattgattggagaagaggtaacaccctttttcagagttgggatggaaattg 7793
Query: 644 aagaaccgggcaaaattttcttcttggtgttgccagggtttcaaaaatgagttgttaatc 703
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7792 aagagccgtgcaaaattttcttcttggtgttgccaggg-ttcaaaaatgagttgttaatc 7734
Query: 704 tgaggggctgggcttggaaaagtccaaactggcctttttttttac-attggtgaccaaga 762
||||||||||| ||||| | |||||||||| | ||| ||||| | |||| ||||||||
Sbjct: 7733 tgaggggctggtcttgg-agagtccaaacttgtcttctttttagcaattgtagaccaaga 7675
Query: 763 attcgagcttggggacccaaatgactggttttgagaatttt 803
|| ||||| || ||| || |||||| ||||||||| ||||
Sbjct: 7674 atcggagctaggtgacgcagatgacttgttttgagagtttt 7634
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8034
Number of Sequences: 1807
Number of extensions: 8034
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)