BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB03RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1548 0.0
3x_Contig1511 377 e-104
>3x_Contig1663
Length = 13533
Score = 1548 bits (781), Expect = 0.0
Identities = 856/879 (97%), Gaps = 2/879 (0%)
Strand = Plus / Plus
Query: 48 aaacgtacgaagaataggaaaccgcacgagtaaagaagtcacggaatcaagaaatgctcc 107
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9720 aaacgtacgaagaataggaaaccgcacgag-aaagaagtcacggaatcaagaaatgctcc 9778
Query: 108 ccgatgcgtgatacattgtccgacgaataggaggaaacgcatgatgaaaataacgaagaa 167
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9779 tcgatgcgtgatacattgtccgacgaataggaggaaacgcatgatgaaaataacgaagaa 9838
Query: 168 taaagacactttagatgatcttgatgtacttgatgcaatttacaaaggatctccaggtta 227
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9839 taaagatactttagatgatcttgatgtacttgatgcaatttacaaaggatctccgggtta 9898
Query: 228 cgaacgaattttcagaccagagaaccgaatagatattggtcatttgttaaaagtgagtaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9899 cgaacgaattttcagaccagagaaccgaatagatattggtcatttgttaaaagtgagtaa 9958
Query: 288 acagccacaaagaggaaacgtaaaccgtaatagtgtcgcaaaaccaactttaaacgaatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9959 acagccacaaagaggaaacgtaaaccgtaatagtgtcgcaaaaccaactttaaacgaatc 10018
Query: 348 tacgtccgtcctcccacctccaaggacgttggcctggaataatacttactcgatgaagtt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10019 tacgtccgtcctcccacctccaaggacgttggcctggaataatacttactcgatgaagtt 10078
Query: 408 tcatgatccgtctcttcttcagaagtccattaatcatactgtgaagcagttgaagaggta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10079 tcatgatccgtctcttcttcagaagtccattaatcatactgtgaagcagttgaagaggta 10138
Query: 468 atgatcctgccccgtaacataacgttaatgatcaatacaagcatcagtttctgtctcatg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10139 atgatcctgccccgtaacataacgttaatgatcaatacaagcatcagtttctgtctcatg 10198
Query: 528 agtatcattcgccgatctgaggtgggtttgtactcatgtatctggtgcattagtatacag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10199 agtatcattcgccgatctgaggtgggtttgtactcatgtatctggtgcattagtatacag 10258
Query: 588 ctatatatcccaatcaagtgttcacgtgactcatcaccactaacgaaccaataaatatca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10259 ctatatatcccaatcaagtgttcacgtgactcatcaccactaacgaaccaataaatatca 10318
Query: 648 tgttcgtattatatgatntatatgcaccaagataattgaggttcanaggttttatttgga 707
||||||||||||||||| |||||||||||||| |||||||||||| ||| |||| |||||
Sbjct: 10319 tgttcgtattatatgatttatatgcaccaagaaaattgaggttcaaagg-tttaattgga 10377
Query: 708 atgaagatttcgttagtgagcgaatagacacccgtaacttataaatgaagtgttttagac 767
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 10378 atgaagattccgttagtgagcgaatagacaccggtaacttataaatgaagtgttttagac 10437
Query: 768 tagcctagggaaagcacaagaaagtgttacataatgttcagagccgtaccattgaccttg 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10438 tagcctagggaaagcacaagaaagtgttacataatgttcagagccgtaccattgacctta 10497
Query: 828 agaggcagccgtagtttttccaccattttcatcagacgtaatgtcatccaagaacttatc 887
|||| ||||||| |||||||||||| ||||||||||||||||||||||||||| || |
Sbjct: 10498 agagccagccgtggtttttccaccagtttcatcagacgtaatgtcatccaagacctatac 10557
Query: 888 ttaaaggaattgaaggcccgggatttgaatccaatcaca 926
|||||||||||||||||| | ||||||| |||||||||
Sbjct: 10558 ttaaaggaattgaaggccgtgaatttgaagccaatcaca 10596
>3x_Contig1511
Length = 8569
Score = 377 bits (190), Expect = e-104
Identities = 211/214 (98%), Gaps = 3/214 (1%)
Strand = Plus / Minus
Query: 48 aaacgtacgaagaataggaaaccgcacgagtaaagaagtcacggaatcaagaaatgctcc 107
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 213 aaacgtacgaagaataggaaaccgcacgag-aaagaagtcacggaatcaagaaatgctcc 155
Query: 108 ccgatgcgtgatacattgtccgacgaataggaggaaacgcatgatgaaaataacgaagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ccgatgcgtgatacattgtccgacgaataggaggaaacgcatgatgaaaataacgaagaa 95
Query: 168 taaagacactttagatgatcttgatgtacttgatgcaatttacaaaggatctccaggtta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 taaagacactttagatgatcttgatgtacttgatgcaatttacaaaggatctccaggtta 35
Query: 228 cgaacgaattttcag-accagaga-accgaatag 259
||||||||||||||| |||||||| |||||||||
Sbjct: 34 cgaacgaattttcagcaccagagagaccgaatag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5943
Number of Sequences: 1807
Number of extensions: 5943
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)