BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB04FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1324 0.0
>3x_Contig1758
Length = 25930
Score = 1324 bits (668), Expect = 0.0
Identities = 729/744 (97%), Gaps = 4/744 (0%)
Strand = Plus / Minus
Query: 90 cagaagaatgatgtgttcattgataacgatgctgtgtttttcgaagatgacgaaccccat 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14019 cagaagaatgatgtgttcattgataacgatgctgtgtttttcgaagatgacgaaccccat 13960
Query: 150 ttcttttcagccggaagggtcaactcgccaggaaagattagaaccggcagaaagtcaagt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13959 ttcttttcagccggaagggtcaactcgccaggaaagattagaaccggcagaaagtcaagt 13900
Query: 210 tcgaa-cattat-aattggttggttccttagagcaatacaagaataactggttaatgtta 267
||||| || || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13899 tcgaaacaagatgaagtggttggttccttagagcaatacaagaataactggttaatgtta 13840
Query: 268 caacagtaccaagattaactgcaatatatataatcgtttatatttcatttttcatttctt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13839 caacagtaccaagattaactgcaatatatataatcgtttatatttcatttttcatttctt 13780
Query: 328 agttttactccactaccaatgtctatattttttattgagttactattttaactttgagaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13779 agttttactccactaccaatgtctatattttttattgagttactattttaactttgagaa 13720
Query: 388 agatgcgaattagggtttggttaaacctaacgtacattaaatgttgtcgttgttccatta 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13719 agatgcgaattagggtttggttaaacctaacgtacattaaatgttgtcgttgttccatta 13660
Query: 448 tttaattttattctgagtacagtgcacttggaacagactataatgctgtgtgctcgttat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13659 tttaattttattctgagtacagtgcacttggaacagactataatgctgtgtgctcgttat 13600
Query: 508 ataaagaaaagtttgtgagttttgaattgttcgtctttgcgtatgaaaagtattttaaca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13599 ataaagaaaagtttgtgagttttgaattgttcgtctttgcgtatgaaaagtattttaaca 13540
Query: 568 agcttgggatgagaagtagtagaagagtacccagtacttttactagcttgatattatacg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13539 agcttgggatgagaagtagtagaagagtacccagtacttttactagcttgatattatacg 13480
Query: 628 tttcaaccgatccttgatgaatggcttcatcgttatttatcagattagatttttgtactt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13479 tttcaaccgatccttgatgaatggcttcatcgttatttatcagattagattttgtaactt 13420
Query: 688 gtggaatggttgtatcattttttttgctttgtcaattcatcgtgcttcgctttggccagc 747
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13419 gtggaatggttgtatca-tttttttgctttgtcaattcatcgtgcttcgctttggccagc 13361
Query: 748 ttgagc-aagttgtatcagaatcctgttcatttttcttaatggctccggcagtgacacgg 806
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13360 ttgagcaaagtgttatcagaatcctgttcatttttcttaatggctccggcagtgacacgg 13301
Query: 807 gcgtcatccagaactaagttttga 830
||||||| ||||||||||||||
Sbjct: 13300 tcgtcatcaggaactaagttttga 13277
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7832
Number of Sequences: 1807
Number of extensions: 7832
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)