BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB04RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 1342 0.0
>3x_Contig787
Length = 1880
Score = 1342 bits (677), Expect = 0.0
Identities = 735/749 (98%), Gaps = 4/749 (0%)
Strand = Plus / Minus
Query: 53 tagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcgtaaaa 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcgtaaaa 761
Query: 113 gcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagtca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagtca 701
Query: 173 aataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttaggggagg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttaggggagg 641
Query: 233 gatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtgggt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtgggt 581
Query: 293 gtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtgtg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtgtg 521
Query: 353 ggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaaccttttc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaaccttttc 461
Query: 413 caattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcatagcagc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 caattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcatagcagc 401
Query: 473 aacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaatc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaatc 341
Query: 533 tctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactggaacc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactggaacc 281
Query: 593 agtcaagatagccataactttagagtaatccttgtttgttactttacctgcggagttcca 652
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 280 agtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggagttcca 221
Query: 653 ttcgattgggtacaaatcag-caaatcgttttccataaccaccgaagcggcagaacccaa 711
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||
Sbjct: 220 ttcgattgggtacaaatcagccaaatcgttttcgataacgaccgaagcggcagaagccaa 161
Query: 712 gttccctaattgttaggccagaccagagaccaaagctctatcttcttggaagaaataatt 771
||| |||||||| ||||| ||||||||||||||||||||| |||| |||| || ||||||
Sbjct: 160 gttacctaattgataggcaagaccagagaccaaagctctagcttc-tggaggagataatt 102
Query: 772 ccggaaagatggattggaaagaacacccc 800
|||||||||||||||| |||||||||||
Sbjct: 101 -cggaaagatggattgg-aagaacacccc 75
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7635
Number of Sequences: 1807
Number of extensions: 7635
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)