BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB06RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1477 0.0
>3x_Contig1788
Length = 28493
Score = 1477 bits (745), Expect = 0.0
Identities = 846/875 (96%), Gaps = 4/875 (0%)
Strand = Plus / Plus
Query: 49 gataaagtggagtttgttatggcgatgcatttgattcagctaacactacagcaaaacgca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18213 gataaagtggagtttgttatggcgatgcatttgattcagctaacactacagcaaaacgca 18272
Query: 109 gccgttcaaaacttaccttctactttgccaaattatttgtggaattctttgaatagtaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18273 gccgttcaaaacttaccttctactttgccaaattatttgtggaattctttgaatagtaca 18332
Query: 169 gcatcttctactctgactccactgagcgccaataacacaggcttctctttcacatctggc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18333 gcatcttctactctgactccactgagcgccaataacacaggcttctctttcacatctggc 18392
Query: 229 agtggatctgttgtcagaaatccgggaattatcagaaaaccttctttgtccagacttcca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18393 agtggatctgttgtcagaaatccgggaattatcagaaaaccttctttgtccagacttcca 18452
Query: 289 tccggtactttttctaatgctgcaacagattggaccttgactcttgaaaaaaagcagcag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18453 tccggtactttttctaatgctgcaacagattggaccttgactcttgaaaaaaagcagcag 18512
Query: 349 tttgacgctattttcgattctttggataaagagaaaaagggttccttaggttctaacgtc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18513 tttgacgctattttcgattctttggataaagagaaaaagggttccttaggttctaacgtc 18572
Query: 409 ttagttccattttttttgacatcgaaattgggacaggatgtcttagcaactgtgtgggat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18573 ttagttccattttttttgacatcgaaattgggacaggatgtcttagcaactgtgtgggat 18632
Query: 469 cttgctgatattcataacagtccagttttcactaaggttgaatttgcgattgcaatgttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18633 cttgctgatattcataacagtccagttttcactaaggttgaatttgcgattgcaatgttt 18692
Query: 529 ttaattcagaagaagaatgccgggatcgaattgccagatgttgttcctgatcaattatta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18693 ttaattcagaagaagaatgccgggatcgaattgccagatgttgttcctgatcaattatta 18752
Query: 589 aattcgccagctttaggtttgtaccatcaacaacaacatcaacatcaacaacagcgcatt 648
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 18753 aattcgccagctttaggtttgtaccatcaacaacaacaacaacaacaacaacagcgcatt 18812
Query: 649 agtgtagcaagcaccggagatgctggtcaaaattaccaaaattttgcagctccagttcaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 18813 agtgtagcaagcaccggagatgctggtcaaaattaccaaaattttgcagctccggttcaa 18872
Query: 709 gctcagaaaaccagtattagcgctctggatgacttgnctggtcctaatgaattattcact 768
|||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||
Sbjct: 18873 gctcagaaaaccagtaatagcgctctggatgacttgcttggtctaaatgaatcattcact 18932
Query: 769 cctccggctccatctctttcttcccagccacaatcatcggcttaacctttaacacaattg 828
|||||| ||||||||||| ||||||||||||||||||||||| | |||| ||||| |||
Sbjct: 18933 cctccgcctccatctcttccttcccagccacaatcatcggctcagccttcaacac-attt 18991
Query: 829 ggcaccaatggctagg-aatttaaaccctcttttacatttgggacaaa-cattatncctg 886
|||||||| |||||| |||||| ||| || | ||||||| ||||||| |||||| ||||
Sbjct: 18992 ggcaccaaatgctaggaaatttagaccttcatctacattt-ggacaaaccattatccctg 19050
Query: 887 aagaagtgggtaacgaccagtaacaacaacaacag 921
|||||| |||||||||||| ||||||||||||||
Sbjct: 19051 aagaaggtggtaacgaccagcaacaacaacaacag 19085
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8044
Number of Sequences: 1807
Number of extensions: 8044
Number of successful extensions: 260
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)