BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB07RM1.SCF screened BAC_end
(880 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig584 1269 0.0
>3x_Contig584
Length = 3317
Score = 1269 bits (640), Expect = 0.0
Identities = 673/682 (98%), Gaps = 2/682 (0%)
Strand = Plus / Plus
Query: 40 caactttctgcaggtatgaatcaaggtcatgagtcaagttgatcaaattgaaattctcaa 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caactttctgcaggtatgaatcaaggtcatgagtcaagttgatcaaattgaaattctcaa 622
Query: 100 gctctgcaacgtcagatttcttataagcaaagatcgatgaaaacccatgttgttcaatac 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gctctgcaacgtcagatttcttataagcaaagatcgatgaaaacccatgttgttcaatac 682
Query: 160 gtctgaaaaatttctcatggaacaaacactcgttgttatcatcgtattggaagaatttat 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtctgaaaaatttctcatggaacaaacactcgttgttatcatcgtattggaagaatttat 742
Query: 220 ctcgaagcagcgggtcgtattcacccagaatcccatagtagaccccaccagaaccggaat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctcgaagcagcgggtcgtattcacccagaatcccatagtagaccccaccagaaccggaat 802
Query: 280 aatttaaagatcgacggacatacctctgctgggggctttgcggcgtccgatttaaagtgt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aatttaaagatcgacggacatacctctgctgggggctttgcggcgtccgatttaaagtgt 862
Query: 340 tcaaattgtaaaaaggcgcatcctcattcaaaaacaccgcgagccattcatgttccatca 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tcaaattgtaaaaaggcgcatcctcattcaaaaacaccgcgagccattcatgttccatca 922
Query: 400 tagtgggcaaagagtctggctcaccctgcataaaactgcattcaatgcctcgattctcac 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tagtgggcaaagagtctggctcaccctgcataaaactgcattcaatgcctcgattctcac 982
Query: 460 acaattggcatggtcctctatccgattctcttgtacattttttctttgatttggcacatg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 acaattggcatggtcctctatccgattctcttgtacattttttctttgatttggcacatg 1042
Query: 520 atctacacgaagtangcgttctgccactagctcgagccctcttcttccccctgccatctn 579
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 atctacacgaagtaggcgttctgccactagctcgagccctcttcttccccctgccatctc 1102
Query: 580 caaattctataatcatctcaccaggagtctttctcttgccattttctcttatcttcactc 639
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1103 caaattctataatcatctcaccaggagtctttctcttgcca-tttctcttatcttcactc 1161
Query: 640 atcattcaaagtcaataagatacttttacttatgggattgaggctgatcttcgacattaa 699
|||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||
Sbjct: 1162 atcattcaaagtcaataagatacttttactcatggaattgaggctgatctccgacatcaa 1221
Query: 700 ttacctttgagctggcaatggc 721
| ||| ||||||||||||||||
Sbjct: 1222 taacc-ttgagctggcaatggc 1242
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8558
Number of Sequences: 1807
Number of extensions: 8558
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 880
length of database: 10,358,551
effective HSP length: 16
effective length of query: 864
effective length of database: 10,329,639
effective search space: 8924808096
effective search space used: 8924808096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)